Develop ~> Master v0.10.0 Release #731
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Fix `bad_applepick.star` after running Apple test
Update latest flake8 bugbear finds re B023 in lambda functions
Refactor `ainner` to handle complex values
…allow for scalar valued sigma, update all uses.
…ol_701 Numpy to Volume in `evaluate_t`
.rots ~> .rotations
Sphinx 5 expects a language defined
* added ImageAccessor class * images to property * RelionSource _images() change * keys can be slice list or numpy array * added key tests * first round of sed replacements * second round * small fixes * initial Simulation changes * max num check and ArrayImageSource _images() * formatting * type check and coordinate source _images * format * images_super * small fixes * clean images fix * projections and clean_images * tests fixes * docstrings * abc and docstring changes * orient estimation source _images * start:stop:step * test fixes * add range and filter * projections docstring * refactor _images * iterables * comment * iterable check * clean images docstring * docstrings * cleanup docstrings * bad key check * review fixes * indexing fixes * extra tests * negative indices * negative indices * test caching in lower level _images methods * private class ImageAccessor and remove from source.__init__ * extra checks for slice and out of range indices * rename variable for cleaner diff * geq * clean up relion source cache check Co-authored-by: Garrett Wright <[email protected]>
update sphinx conf `language`
Bump version: 0.9.2 → 0.10.0
Add garrett to codeowners
Batched cls avg
Fix Docstrings Formatting
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Notes look good to me! 🥳 |
Codecov Report
@@ Coverage Diff @@
## master #731 +/- ##
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+ Coverage 86.49% 88.04% +1.54%
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Files 109 114 +5
Lines 8286 8797 +511
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+ Hits 7167 7745 +578
+ Misses 1119 1052 -67
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Ran pytest for pip package against Python 3.7, 3.8, 3.9, 3.10. Docs and gallery built. Ran simulated pipeline experiment. Should be good to move forward with the merge, tag, and push to PyPI. |
amitsinger
approved these changes
Oct 27, 2022
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Need to run some local tests first, but we're almost ready to release.
First draft of notes below:
ASPIRE v0.10.0 is large release adding a wide range of features and fixes.
This release provides the following features:
CLSymmetryC3C4, experimental)ImageSourceBFSReddyChatterjiAverager2DandReddyChatterjiAverager2Dclass averaging image alignersImageSource.imagesRIRClass2Dbatchingcrop_pad_3dClassSelectorAPI andRandomClassSelector(now randomized as default)gaussian_*helper functionsFilter.signmethodCoordinateSourceBug fixes:
dtypepassthroughVolume.flipdefault axis changeBatchedRotCov2Dwhen invoked without CTF detailsVolume.dtypemismatches and checksSystems/CI Updates:
Cleanup and Documentation Updates:
(F)FBBasis3Dtests.rots~>.rotationsattribute cleanupGetting StartedpageFSPCAcomponentsFBBasisMixin)ComplexPCAscikit workaround for upstream releasesevaluateandevaluate_tAPI standardsVery proud of the progress we've made, and thanks for your efforts!