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@alejoe91 alejoe91 commented Jan 7, 2025

Zarr 2.18.0 used to trigger some errors. Let's see if latest releases fixed the issues.

@alejoe91 alejoe91 added the packaging Related to packaging/style label Jan 7, 2025
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alejoe91 commented Jan 7, 2025

@h-mayorquin

seems like the most recent hdmf-zarr/pynwb versions makes the use_pynwb option to fail. Not sure why honestly. The zarr files seem to be ok, and in fact when using zarr directly (use_pynwb=False) all tests pass.

Can you help me look into this? One option could be to simply enforce use_pynwb=False when a zarr backend is detected.

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zm711 commented Jan 7, 2025

Maybe related to the issue at neo. pynwb calling hdmf caused our tests to fail due to changes at the hdmf level in allowable symbols in strings. They started forbidding : and / maybe due to path parsing?

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Yeah, I can take a look.

@alejoe91
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hdmf-issue has been fixed in 0.11.0. I think we can merge this! :)

@samuelgarcia samuelgarcia merged commit 8aeaf9b into SpikeInterface:main Jan 23, 2025
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dhmjhu added a commit to regro-cf-autotick-bot/spikeinterface-feedstock that referenced this pull request Feb 11, 2025
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4 participants