GENome Organisation Visual Analytics
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Jan 14, 2025 - R
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tad
Here are 46 public repositories matching this topic...
A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
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Aug 4, 2022 - Python
High-performance stochastic modeling of DNA loop extrusion interactions
bioinformatics cpp tad biology high-performance dna cpp17 hic loop-extrusion stochastic-model topologically-associated-domains
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Sep 8, 2025 - C++
Super-resolution chromatin tracing 2018
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Nov 7, 2020 - Jupyter Notebook
Pipeline to implement a "TAD_Pathways" analysis. Discover candidate genes based on association signals in TADs
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Dec 21, 2019 - Python
LaTeX template for Qatar University thesis or dissertation
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Jan 6, 2022 - TeX
Trabalho Final - 2º Fase em C do curso de CC da UFFS Chapecó
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Nov 22, 2022 - C
Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.
snakemake tad loop hi-c hic hicexplorer compartments selfish snakemake-pipeline dchic stripenn genova
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Mar 5, 2025 - Python
Este projeto implementa uma árvore binária para tipos genéricos em linguagem c, o projeto contém estrutura de dados e está organizado no padrão de projeto MVC.
tad binary-tree tree-structure structured-data estrutura-de-dados exemplo exemple linguagem-c arvore-binaria
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Jul 10, 2022 - C
This code plots prime numbers, their position, spin, and rotation in the prime hexagon. See The Prime Hexagon video at: https://www.youtube.com/watch?v=fQL4KRH3wUQ
youtube math tad prime pi numbers hexagon phi hexspin gallion primehexagon primenumbers prime-hexagon
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Feb 12, 2018 - Python
TAD Calling using spectral clustering in R
learning package data r genomics tad clustering machine spectral domains mining caller tads hic 3d topologically associating spectraltad
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Nov 22, 2020 - R
Seal foraging areas identified by analysing the dive data obtained from telemetry tracking. Select the likely foraging dives using a vertical approach (Planque et al. 2020), and spatialise them with Kernel densities.
dive tad telemetry spatial mcts gps-location kernels telemetry-data kernel-density-estimation grey-seals harbour-seals dive-data dive-criteria dive-shape foraging-dives foraging-areas diving-predators pinnipeds gsm-tags foraging-behaviour
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Jul 6, 2021 - R
Implementação em C do método de Gauss-Seidel usando estutura de dados.
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Dec 27, 2019 - C
🏪 Sistema de Vendas simples feito em C para fins didaticos.
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Nov 22, 2019 - C
Nextflow workflow to call TAD cliques
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Sep 5, 2025 - Python
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