Ensemble blog

.github/workflows/blog.yaml

@@ -40,6 +40,8 @@ jobs:
       #     conda list
       - name: Install R dependencies
         shell: bash -l {0}
+        env:
+          GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
         run: |
           Rscript ./dependencies.R
       - name: Restore Blogdown Cache

content/_index.md

@@ -20,10 +20,10 @@ carousel:
     alt: Explore the CTIS Dashboard
     image: covidcast_survey.jpg
   - pre: Blog
-    title: COVID Vaccination Trends Among the Hispanic Community in the United States
-    ref: 2021-04-29-vaccine-trends-hispanic
+    title: On the Predictability of COVID-19
+    ref: 2021-09-30-ensemble-analysis
     alt: View Post
-    image: landing-pg_hero_vaccine_hispanic.jpg
+    image: ensemble-hero.jpg
   - pre: Research
     title: An Open Repository of Real-Time COVID-19 Indicators
     link: https://www.medrxiv.org/content/10.1101/2021.07.12.21259660v1

content/people/index.md

@@ -532,15 +532,15 @@ people:
 - key: roni
   firstName: Roni
   lastName: Rosenfeld
-  link: https://cs.cmu.edu/~roni
+  link: https://cs.cmu.edu/~roni/
   image: roni-rosenfeld-500x500-min.jpg
   affiliation: CMU/MLD
   team:
   - leadership
   - highlight
   - blog
   - center-of-excellence
-  description: is a lead researcher in the Delphi group and a Professor and Head of the Machine Learning Department at CMU. He is also a Google Fellow.
+  description: is a Principal Investigator in the Delphi group and a Professor and Head of the Machine Learning Department at CMU. He is also a Google Fellow.
 - firstName: Patti
   lastName: Rote
   image: patti-rote.jpg
@@ -671,15 +671,15 @@ people:
 - key: ryan
   firstName: Ryan
   lastName: Tibshirani
-  link: https://stat.cmu.edu/~ryantibs
+  link: https://stat.cmu.edu/~ryantibs/
   image: ryan-tibshirani-500x500-min.jpg
   affiliation: CMU/MLD/Stat
   team:
   - leadership
   - highlight
   - blog
   - center-of-excellence
-  description: is a lead researcher in the Delphi group, and an Associate Professor in the Department of Statistics & Data Science and the Machine Learning Department at CMU. He is also an Amazon Scholar.
+  description: is a Principal Investigator in the Delphi group, and a Professor in the Department of Statistics & Data Science and the Machine Learning Department at CMU. He is also an Amazon Scholar.
 - firstName: Elena
   lastName: Tuzhilina
   image: elena-tuzhilina-500x500.jpg
@@ -774,12 +774,16 @@ people:
 - key: nickreich
   firstName: Nicholas
   lastName: Reich
+  link: https://reichlab.io/people
+  description: is a Principal Investigator of a CDC Center of Excellence for Influenza Forecasting and founder of the COVID-19 Forecast Hub, and a Professor in Biostatistics and Epidemiology at UMass. 
   external: true
   team:
   - blog
 - key: evanray
   firstName: Evan
   lastName: Ray
+  link: https://reichlab.io/people
+  description: is a Principal Investigator of a CDC Center of Excellence for Influenza Forecasting and founder of the COVID-19 Forecast Hub, and a Research Faculty in Biostatistics and Epidemiology at UMass. 
   external: true
   team:
   - blog

dependencies.R

@@ -7,3 +7,7 @@ install.packages("covidcast", repo="http://cran.rstudio.com/")
 # devtools::install_github("cmu-delphi/covidcast", ref = "main",
 #                          upgrade = 'never',
 #                          subdir = "R-packages/covidcast")
+
+devtools::install_github("reichlab/zoltr", upgrade = 'never', quick = TRUE)
+devtools::install_github("reichlab/covidData", upgrade = 'never', quick = TRUE)
+devtools::install_github("reichlab/covidHubUtils", upgrade = 'never', quick = TRUE)

environment.yml

@@ -36,6 +36,20 @@ dependencies:
   - r-lubridate
   - r-plyr
   - r-ggpubr
+  - r-stringi
+  - r-fansi
+  - r-openssl
+  - r-mime
+  - r-cli
+  - r-rcpp
+  - r-tidyverse
+  - r-bit
+  - r-tzdb
+  - r-triebeard
+  - r-digest
+  - r-vroom
+  - r-urltools
+  - r-base64url
   - pandoc
   - fiona
   - geopandas