Test pmt #1

casparvl · 2025-07-30T08:47:26Z

No description provided.

Fill holes created by updated dependencies of Qt5 from EB 5.1.1

casparvl · 2025-07-30T08:47:56Z

bot:show_config

casparvl · 2025-07-30T09:54:15Z

bot:show_config

casparvl · 2025-07-30T09:56:12Z

bot:status

surf-hpcv-bot · 2025-07-30T09:56:15Z

This is the status of all the bot: build commands:

on	for	repo	result	date	status	url

casparvl · 2025-07-30T09:56:27Z

bot:show_config

casparvl · 2025-07-30T09:58:05Z

Since we don't have our own repo yet (and thus we don't have a repo config for it), let's, for now, build for eessi.io-2023.06-software

bot:build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80

casparvl · 2025-07-30T09:59:45Z

Hm, I don't know why it actually isn't doing anything...

[20250730-T09:58:06] [handle_issue_comment_event]: Comment in https://api.github.com/repos/SURF-hpcv/software-layer/issues/1 (owned by @casparvl) created by @casparvl
[20250730-T09:58:06] [handle_issue_comment_event]: comment action 'created' is handled
[20250730-T09:58:06] [handle_issue_comment_event]: account `casparvl` has permission to send commands to bot
[20250730-T09:58:06] [handle_issue_comment_event]: found bot command: 'build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80'
[20250730-T09:58:06] [handle_issue_comment_event]: comment response: '
- received bot command `build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80` from `casparvl`
  - expanded format: `build architecture:zen2 instance:surf-hpcv-bot repository:eessi.io-2023.06-software`'
[20250730-T09:58:06] [handle_bot_command]: Handling bot command build
[20250730-T09:58:07] [handle_bot_command_build]: repository: 'SURF-hpcv/software-layer'

casparvl · 2025-07-30T10:01:42Z

Hm, I must have gotten my app.cfg wrong:

Traceback (most recent call last):
  File "/home/casparvl/EESSI/bot-instance/venv_eessibot/lib64/python3.6/site-packages/pyghee/lib.py", line 194, in process_event
    self.handle_event(event_info, log_file=log_file)
  File "/home/casparvl/EESSI/bot-instance/venv_eessibot/lib64/python3.6/site-packages/pyghee/lib.py", line 124, in handle_event
    handler(event_info, log_file=log_file)
  File "/home/casparvl/EESSI/bot-instance/eessi-bot-software-layer/eessi_bot_event_handler.py", line 310, in handle_issue_comment_event
    update = self.handle_bot_command(event_info, cmd)
  File "/home/casparvl/EESSI/bot-instance/eessi-bot-software-layer/eessi_bot_event_handler.py", line 489, in handle_bot_command
    return handler(event_info, bot_command)
  File "/home/casparvl/EESSI/bot-instance/eessi-bot-software-layer/eessi_bot_event_handler.py", line 535, in handle_bot_command_build
    submitted_jobs = submit_build_jobs(pr, event_info, bot_command.action_filters, bot_command.build_params)
  File "/home/casparvl/EESSI/bot-instance/eessi-bot-software-layer/tasks/build.py", line 1052, in submit_build_jobs
    jobs = prepare_jobs(pr, cfg, event_info, action_filter, build_params)
  File "/home/casparvl/EESSI/bot-instance/eessi-bot-software-layer/tasks/build.py", line 575, in prepare_jobs
    node_map = get_node_types(cfg)
  File "/home/casparvl/EESSI/bot-instance/eessi-bot-software-layer/tasks/build.py", line 200, in get_node_types
    node_type_map = json.loads(node_types.get(config.NODE_TYPE_MAP))
  File "/usr/lib64/python3.6/json/__init__.py", line 354, in loads
    return _default_decoder.decode(s)
  File "/usr/lib64/python3.6/json/decoder.py", line 339, in decode
    obj, end = self.raw_decode(s, idx=_w(s, 0).end())
  File "/usr/lib64/python3.6/json/decoder.py", line 355, in raw_decode
    obj, end = self.scan_once(s, idx)
json.decoder.JSONDecodeError: Expecting property name enclosed in double quotes: line 79 column 3 (char 3343)

casparvl · 2025-07-30T10:02:38Z

Ah, I didn't close it properly. Retrying:

bot:show_config

surf-hpcv-bot · 2025-07-30T10:02:42Z

Instance SURF-hpcv-bot is configured to build on:

Node type x86-64-generic:
- OS: linux
- CPU architecture: x86_64/generic
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-haswell:
- OS: linux
- CPU architecture: x86_64/intel/haswell
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-sapphirerapids:
- OS: linux
- CPU architecture: x86_64/intel/sapphirerapids
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-skylake:
- OS: linux
- CPU architecture: x86_64/intel/skylake_avx512
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-cascadelake:
- OS: linux
- CPU architecture: x86_64/intel/cascadelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-icelake:
- OS: linux
- CPU architecture: x86_64/intel/icelake
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-zen2:
- OS: linux
- CPU architecture: x86_64/amd/zen2
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-zen3:
- OS: linux
- CPU architecture: x86_64/amd/zen3
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type x86-64-zen4:
- OS: linux
- CPU architecture: x86_64/amd/zen4
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-generic:
- OS: linux
- CPU architecture: aarch64/generic
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-neoverse_n1:
- OS: linux
- CPU architecture: aarch64/neoverse_n1
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-neoverse_v1:
- OS: linux
- CPU architecture: aarch64/neoverse_v1
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']
Node type aarch64-graviton4:
- OS: linux
- CPU architecture: aarch64/aws/graviton4
- Repositories: ['eessi.io-2023.06-compat', 'eessi.io-2023.06-software', 'eessi.io-2025.06-compat', 'eessi.io-2025.06-software']

casparvl · 2025-07-30T10:03:18Z

Now that's more like it! Lets try a build:

bot:build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80

casparvl · 2025-07-30T10:08:32Z

Ah, in my app.cfg I called the bot SURF-hpc-bot, with caps. I'll undo that to make it similar to the app name in github. Now retrying:

bot:build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80

surf-hpcv-bot · 2025-07-30T10:08:39Z

New job on instance surf-hpcv-bot for repository eessi.io-2023.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2 and accelerator nvidia/cc80
Job dir: /project/def-users/casparvl/hpcv-bot-instance/jobs/2025.07/pr_1/79559

date	job status	comment
Jul 30 10:08:38 UTC 2025	submitted	job id `79559` awaits release by job manager
Jul 30 10:08:59 UTC 2025	released	job awaits launch by Slurm scheduler
Jul 30 10:17:02 UTC 2025	running	job `79559` is running
Jul 30 10:24:09 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-79559.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-17538709920.tar.gz` size: 0 MiB (45 bytes) entries: 0 modules under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/modules/all no module files in tarball software under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/software no software packages in tarball other under 2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80 no other files in tarball
Jul 30 10:24:09 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-79559.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

casparvl · 2025-07-30T10:09:06Z

bot:status

surf-hpcv-bot · 2025-07-30T10:09:09Z

This is the status of all the bot: build commands:

on	for	repo	result	date	status	url

casparvl · 2025-07-30T12:00:59Z

bot:status

surf-hpcv-bot · 2025-07-30T12:01:02Z

This is the status of all the bot: build commands:

on	for	repo	result	date	status	url
`amd-zen2`	`x86_64/amd/zen2`, `nvidia/cc80`	eessi.io-2023.06-software	😢 FAILURE	Jul 30 10:24:09 UTC 2025	finished	#1 (comment)

casparvl · 2025-07-30T12:01:58Z

Btw, failure is

== 2025-07-30 10:22:23,882 modules.py:835 DEBUG Output of module command '/cvmfs/software.eessi.io/versions/2023.06/compat/linux/x86_64/usr/share/Lmod/libexec/lmod python load CUDA/12.1.1': stdout: _mlstatus = False
; stderr: Lmod has detected the following error:
You requested to load CUDA  but while the module file exists, the actual
software is not entirely shipped with EESSI due to licencing. You will need to
install a full copy of the CUDA package where EESSI can find it.
For more information on how to do this, see
https://www.eessi.io/docs/site_specific_config/gpu/.

While processing the following module(s):
    Module fullname  Module Filename
    ---------------  ---------------
    CUDA/12.1.1      /cvmfs/software.eessi.io/host_injections/2023.06/software/linux/x86_64/amd/zen2/accel/nvidia/cc80/.modules/all/CUDA/12.1.1.lua

doesn't seem to be related to this particular bot instance, but something wrong with our LMOD hooks for CUDA maybe?

{2023.06}[foss/2023a] Octave 10.1.0

casparvl · 2025-07-31T14:52:34Z

bot:build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80

surf-hpcv-bot · 2025-07-31T14:52:41Z

New job on instance surf-hpcv-bot for repository eessi.io-2023.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2 and accelerator nvidia/cc80
Job dir: /project/def-users/casparvl/hpcv-bot-instance/jobs/2025.07/pr_1/79807

date	job status	comment
Jul 31 14:52:40 UTC 2025	submitted	job id `79807` awaits release by job manager
Jul 31 14:52:54 UTC 2025	released	job awaits launch by Slurm scheduler
Jul 31 14:54:57 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job79807.result` does not exist in job directory or reading it failed. No artefacts were found/reported.
Jul 31 14:54:57 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job79807.test` does not exist in job directory or reading it failed.

casparvl · 2025-07-31T14:53:46Z

not where I wanted to test this... cancelling

…easyconfigs

Install BWA-0.7.18-GCCcore-12.3.0.eb as part of the DoitNow test builds on Deucalin

…023b {2023.06}[2023b,a64fx] Lit and Astropy

…tacks Fix symlink failure easystacks

Signed-off-by: laraPPr <[email protected]>

… layer being in sync across CPU targets

also check on EESSI 2025.06 w.r.t. missing installations and software layer being in sync across CPU targets

…CC-13.3.0-14.2.0 {2025.06} GCC 13.3.0 + 14.2.0

{2023.06}[2023a] MrBayes

casparvl · 2025-08-25T11:09:46Z

bot:show_config

casparvl · 2025-08-25T11:10:15Z

bot:build instance:surf-hpcv-bot repo:eessi.io-2023.06-software on:arch=zen2 for:arch=x86_64/amd/zen2,accel=nvidia/cc80

{2023.06}[2023a,a64fx] BWA-0.7.18

…st_pmt

casparvl · 2025-10-06T12:02:48Z

bot:show_config

Caspar van Leeuwen and others added 10 commits July 2, 2025 13:59

Add pmt as test

e508884

Merge branch 'main' into test_pmt

f970d33

Testing Alan's feature branch for software layer scripts

ffe79b4

Restore original bot/build.sh

54819b8

Use PR EESSI#36 to test if that fixes the test issue

1c6c33c

Fix gh username

f61266f

Add estack file for 5.1.1-2023a + Octave easyconfig

829053f

Added explicit GraphicsMagick dependency with PR with fixx

0f64d77

Add holes created by updated dependencies of Qt5 from EB 5.1.1

8326110

Merge pull request EESSI#1145 from ocaisa/libheif_hole_filler

e752e1f

Fill holes created by updated dependencies of Qt5 from EB 5.1.1

Merge branch 'main' into feature-Octave-2023a

000231d

Merge pull request EESSI#1142 from Crivella/feature-Octave-2023a

c66929d

{2023.06}[foss/2023a] Octave 10.1.0

casparvl mentioned this pull request Jul 31, 2025

Don't use an accel subdirectory when installing CUDA and libraries to unbreak symlinks EESSI/software-layer-scripts#46

Merged

boegel and others added 16 commits August 5, 2025 13:50

{2025.06} GCC 13.3.0 + 14.2.0

3940327

split up in seperate easystack files for 2024a + 2025a generation of …

daa1fad

…easyconfigs

Update eessi-2023.06-eb-4.9.4-2023a.yml

b92f5de

Install BWA-0.7.18-GCCcore-12.3.0.eb as part of the DoitNow test builds on Deucalin

minior fix

e862233

add lit and astropy

6bfe723

Merge pull request EESSI#1153 from dagonzalezfo/2023.06-a64fx-4.9.4-2…

130f4bc

…023b {2023.06}[2023b,a64fx] Lit and Astropy

Exclude EasyStacks dir from software-layer-scripts from being symlinked

98ff5bd

Merge pull request EESSI#1156 from casparvl/fix_symlink_failure_easys…

c5ac331

…tacks Fix symlink failure easystacks

Merge branch 'main' into 2025.06-software.eessi.io-GCC-13.3.0-14.2.0

8fdfb98

{2023.06}[2023a] MrBayes

82dca90

Signed-off-by: laraPPr <[email protected]>

also check on EESSI 2025.06 w.r.t. missing installations and software…

ead68fe

… layer being in sync across CPU targets

also include aarch/a64fx in comparison for EESSI 2025.06

a62b125

Merge pull request EESSI#1162 from boegel/ci_missing_sync_EESSI_2025.06

908ebdb

also check on EESSI 2025.06 w.r.t. missing installations and software layer being in sync across CPU targets

Merge branch 'main' into 2025.06-software.eessi.io-GCC-13.3.0-14.2.0

f9a143c

Merge pull request EESSI#1146 from boegel/2025.06-software.eessi.io-G…

7055ddf

…CC-13.3.0-14.2.0 {2025.06} GCC 13.3.0 + 14.2.0

Merge pull request EESSI#1157 from laraPPr/mr_bayes

28d8927

{2023.06}[2023a] MrBayes

boegel and others added 5 commits August 25, 2025 15:58

remove useless comment from easystack file

3f9af3b

Merge pull request EESSI#1150 from dagonzalezfo/main

9223cd7

{2023.06}[2023a,a64fx] BWA-0.7.18

Update bot/build.sh

2594177

Merge branch 'main' into test_pmt

0800af4

Merge branch 'test_pmt' of github.com:casparvl/software-layer into te…

76a00cb

…st_pmt

Test pmt #1

Are you sure you want to change the base?

Test pmt #1

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