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Adding BWA to to Deucalion under 2023a toolchain

Install BWA-0.7.18-GCCcore-12.3.0.eb as part of the DoitNow test builds on Deucalin
@dagonzalezfo
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bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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@hvelab
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hvelab commented Aug 11, 2025

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion architecture:aarch64/a64fx

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eessi-bot-deucalion bot commented Aug 11, 2025

New job on instance eessi-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/eessibot/new-bot/jobs/2025.08/pr_1150/509930

date job status comment
Aug 11 15:31:23 UTC 2025 submitted job id 509930 awaits release by job manager
Aug 11 15:31:35 UTC 2025 released job awaits launch by Slurm scheduler
Aug 11 15:32:37 UTC 2025 running job 509930 is running
Aug 11 15:59:17 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-509930.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-17549276560.tar.gzsize: 0 MiB (430239 bytes)
entries: 52
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
BWA/0.7.18-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
BWA/0.7.18-GCCcore-12.3.0
reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod
no reprod directories in tarball
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Aug 11 15:59:17 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ SKIP ] (1/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ SKIP ] (2/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ SKIP ] (3/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ SKIP ] (4/9) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed
[ OK ] (5/9) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default
P: perf: 580.737 timesteps/s (r:0, l:None, u:None)
[ OK ] (6/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default
P: latency: 1.66 us (r:0, l:None, u:None)
[ OK ] (7/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default
P: latency: 1.7 us (r:0, l:None, u:None)
[ OK ] (8/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default
P: bandwidth: 8687.12 MB/s (r:0, l:None, u:None)
[ OK ] (9/9) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default
P: bandwidth: 8532.71 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 5/9 test case(s) from 9 check(s) (0 failure(s), 4 skipped, 0 aborted)
Details
✅ job output file slurm-509930.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Aug 25 12:58:18 UTC 2025 uploaded transfer of eessi-2023.06-software-linux-aarch64-a64fx-17549276560.tar.gz to S3 bucket succeeded

@boegel
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boegel commented Aug 12, 2025

Looks like it worked?

@dagonzalezfo
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Seems like, yes :)

@dagonzalezfo dagonzalezfo changed the title Test for Deucalion Build {2023.06}[2023a,a64fx] BWA-0.7.18 Aug 14, 2025
@dagonzalezfo dagonzalezfo added the ready-to-deploy Mark a PR as ready to deploy label Aug 25, 2025
@dagonzalezfo
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This is ready to be deployed, thanks for the feedback @boegel

@boegel boegel added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Aug 25, 2025
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boegel commented Aug 25, 2025

staging PR merged

@boegel boegel merged commit 9223cd7 into EESSI:main Aug 25, 2025
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3 participants