{2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993

trz42 · 2025-04-02T17:28:01Z

This PR adds a couple of apps built with EB 4.9.4. The list is taken from the effort to build the stack for Sapphire Rapids (see #947). Since then there may be more apps added. We will add those in a separate PR.

Noted, a bit inconsistent use of commit SHAs. In some cases we use the last commit before the merge commit and in other cases (majority it seems) we use the merge commit.

eessi-bot · 2025-04-02T17:28:05Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

eessi-bot · 2025-04-02T17:28:06Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

eessi-bot-surf · 2025-04-02T17:28:06Z

Instance eessi-bot-surf is configured to build for:

architectures: x86_64/amd/zen4, x86_64/amd/zen2
repositories: eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-compat, eessi.io-2023.06-software

trz42 · 2025-04-02T17:29:46Z

bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes

eessi-bot · 2025-04-02T17:29:49Z

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parsing the bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes, received from sender trz42, failed

eessi-bot · 2025-04-02T17:29:50Z

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parsing the bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes, received from sender trz42, failed

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trz42 · 2025-04-02T17:31:13Z

bot: show_config

eessi-bot · 2025-04-02T17:31:15Z

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received bot command show_config from trz42
- expanded format: show_config
handling command show_config resulted in:
- added comment {2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993 (comment) to show configuration

eessi-bot · 2025-04-02T17:31:15Z

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received bot command show_config from trz42
- expanded format: show_config
handling command show_config resulted in:
- added comment {2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993 (comment) to show configuration

eessi-bot-surf · 2025-04-02T17:31:16Z

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eessi-bot-trz42 · 2025-04-02T17:31:16Z

Updates by the bot instance trz42-GH200-jr (click for details)

received bot command show_config from trz42
- expanded format: show_config
handling command show_config resulted in:
- added comment {2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993 (comment) to show configuration

eessi-bot · 2025-04-02T17:31:17Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/sapphirerapids, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-software, eessi.io-2023.06-compat

eessi-bot · 2025-04-02T17:31:18Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi.io-2023.06-compat, eessi.io-2023.06-software

eessi-bot-trz42 · 2025-04-02T17:31:19Z

Instance trz42-GH200-jr is configured to build for:

architectures: aarch64/nvidia/grace
repositories: eessi.io-2023.06-software

trz42 · 2025-04-02T17:32:32Z

Bot was stuck and didn't respond. Retrying...
bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes

eessi-bot · 2025-04-02T17:32:35Z

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parsing the bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes, received from sender trz42, failed

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eessi-bot-trz42 · 2025-04-02T17:32:36Z

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received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes resulted in:
- submitted job 13553748, for details & status see {2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993 (comment)

eessi-bot-trz42 · 2025-04-02T17:32:41Z

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_993/13553748

failed due to

  >> download failed: http://tau.uoregon.edu/pdt_releases/pdtoolkit-3.25.2.tar.gz
  >> download failed: https://sources.easybuild.io/p/PDT/pdtoolkit-3.25.2.tar.gz

date	job status	comment
Apr 02 17:32:40 UTC 2025	submitted	job id `13553748` awaits release by job manager
Apr 02 17:33:28 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 02 17:34:32 UTC 2025	running	job `13553748` is running
Apr 02 17:55:04 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13553748.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-nvidia-grace-1743616309.tar.gz` size: 74 MiB (77761143 bytes) entries: 1231 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all `CubeLib/4.8.2-GCCcore-13.2.0.lua` `CubeWriter/4.8.2-GCCcore-13.2.0.lua` `OPARI2/2.0.8-GCCcore-13.2.0.lua` `OTF2/3.0.3-GCCcore-13.2.0.lua` `SIONlib/1.7.7-GCCcore-13.2.0-tools.lua` software under 2023.06/software/linux/aarch64/nvidia/grace/software `CubeLib/4.8.2-GCCcore-13.2.0` `CubeWriter/4.8.2-GCCcore-13.2.0` `OPARI2/2.0.8-GCCcore-13.2.0` `OTF2/3.0.3-GCCcore-13.2.0` `SIONlib/1.7.7-GCCcore-13.2.0-tools` other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Apr 02 17:55:04 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-13553748.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

trz42 · 2025-04-03T04:37:29Z

Copied tarball for pdtoolkit into shared sources directory...
bot: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes

eessi-bot · 2025-04-03T04:37:32Z

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parsing the bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes, received from sender trz42, failed

eessi-bot · 2025-04-03T04:37:32Z

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parsing the bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes, received from sender trz42, failed

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eessi-bot-trz42 · 2025-04-03T04:37:32Z

Updates by the bot instance trz42-GH200-jr (click for details)

received bot command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes from trz42
- expanded format: build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes
handling command build instance:trz42-GH200-jr repository:eessi.io-2023.06-software architecture:aarch64/nvidia/grace exportvariable:SKIP_TESTS=yes resulted in:
- submitted job 13554478, for details & status see {2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993 (comment)

eessi-bot-trz42 · 2025-04-03T04:37:37Z

New job on instance trz42-GH200-jr for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2023.06-software in job dir /p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_993/13554478

date	job status	comment
Apr 03 04:37:36 UTC 2025	submitted	job id `13554478` awaits release by job manager
Apr 03 04:38:01 UTC 2025	released	job awaits launch by Slurm scheduler
Apr 03 04:39:04 UTC 2025	running	job `13554478` is running
Apr 03 07:17:54 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13554478.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-nvidia-grace-1743664320.tar.gz` size: 692 MiB (725926401 bytes) entries: 52710 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all `Abseil/20240116.1-GCCcore-13.2.0.lua` `Arrow/16.1.0-gfbf-2023b.lua` `CubeLib/4.8.2-GCCcore-13.2.0.lua` `CubeWriter/4.8.2-GCCcore-13.2.0.lua` `Cython/3.0.10-GCCcore-13.2.0.lua` `DP3/6.2-foss-2023b.lua` `EveryBeam/0.6.1-foss-2023b.lua` `GDRCopy/2.4-GCCcore-13.2.0.lua` `GROMACS/2024.4-foss-2023b.lua` `GST-plugins-base/1.24.8-GCC-13.2.0.lua` `GStreamer/1.24.8-GCC-13.2.0.lua` `Graphene/1.10.8-GCCcore-13.2.0.lua` `Mustache/1.3.3-foss-2023b.lua` `OPARI2/2.0.8-GCCcore-13.2.0.lua` `OTF2/3.0.3-GCCcore-13.2.0.lua` `PDT/3.25.2-GCCcore-13.2.0.lua` `RE2/2024-03-01-GCCcore-13.2.0.lua` `RapidJSON/1.1.0-20240409-GCCcore-13.2.0.lua` `Rust/1.76.0-GCCcore-13.2.0.lua` `SIONlib/1.7.7-GCCcore-13.2.0-tools.lua` `Score-P/8.4-gompi-2023b.lua` `SlurmViewer/1.0.1-GCCcore-13.2.0.lua` `WSClean/3.5-foss-2023b.lua` `cooler/0.10.2-foss-2023b.lua` `dill/0.3.8-GCCcore-13.2.0.lua` `h5py/3.11.0-foss-2023b.lua` `hic-straw/1.3.1-foss-2023b.lua` `maturin/1.5.0-GCCcore-13.2.0-Rust-1.76.0.lua` `multiprocess/0.70.16-gfbf-2023b.lua` `pydantic/2.7.4-GCCcore-13.2.0.lua` `pyfaidx/0.8.1.1-GCCcore-13.2.0.lua` `statsmodels/0.14.1-gfbf-2023b.lua` `typing-extensions/4.10.0-GCCcore-13.2.0.lua` `utf8proc/2.9.0-GCCcore-13.2.0.lua` `wxWidgets/3.2.6-GCC-13.2.0.lua` software under 2023.06/software/linux/aarch64/nvidia/grace/software `Abseil/20240116.1-GCCcore-13.2.0` `Arrow/16.1.0-gfbf-2023b` `CubeLib/4.8.2-GCCcore-13.2.0` `CubeWriter/4.8.2-GCCcore-13.2.0` `Cython/3.0.10-GCCcore-13.2.0` `DP3/6.2-foss-2023b` `EveryBeam/0.6.1-foss-2023b` `GDRCopy/2.4-GCCcore-13.2.0` `GROMACS/2024.4-foss-2023b` `GST-plugins-base/1.24.8-GCC-13.2.0` `GStreamer/1.24.8-GCC-13.2.0` `Graphene/1.10.8-GCCcore-13.2.0` `Mustache/1.3.3-foss-2023b` `OPARI2/2.0.8-GCCcore-13.2.0` `OTF2/3.0.3-GCCcore-13.2.0` `PDT/3.25.2-GCCcore-13.2.0` `RE2/2024-03-01-GCCcore-13.2.0` `RapidJSON/1.1.0-20240409-GCCcore-13.2.0` `Rust/1.76.0-GCCcore-13.2.0` `SIONlib/1.7.7-GCCcore-13.2.0-tools` `Score-P/8.4-gompi-2023b` `SlurmViewer/1.0.1-GCCcore-13.2.0` `WSClean/3.5-foss-2023b` `cooler/0.10.2-foss-2023b` `dill/0.3.8-GCCcore-13.2.0` `h5py/3.11.0-foss-2023b` `hic-straw/1.3.1-foss-2023b` `maturin/1.5.0-GCCcore-13.2.0-Rust-1.76.0` `multiprocess/0.70.16-gfbf-2023b` `pydantic/2.7.4-GCCcore-13.2.0` `pyfaidx/0.8.1.1-GCCcore-13.2.0` `statsmodels/0.14.1-gfbf-2023b` `typing-extensions/4.10.0-GCCcore-13.2.0` `utf8proc/2.9.0-GCCcore-13.2.0` `wxWidgets/3.2.6-GCC-13.2.0` other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Apr 03 07:17:54 UTC 2025	test result	😢 FAILURE (click triangle for details) Reason Failed for unknown reason Details ✅ job output file `slurm-13554478.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 03 09:20:34 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-nvidia-grace-1743664320.tar.gz` to S3 bucket succeeded

TopRichard

lgtm

eessi-bot-surf · 2025-04-03T09:20:17Z

Label bot:deploy has been set by user trz42, but this person does not have permission to trigger deployments

eessi-bot-toprichard · 2025-04-03T09:20:17Z

Label bot:deploy has been set by user trz42, but this person does not have permission to trigger deployments

TopRichard · 2025-04-03T12:56:31Z

Tarball ingested, accessible

eessi-bot · 2025-04-03T12:56:43Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.03

eessi-bot · 2025-04-03T12:56:43Z

PR merged! Moved [] to /project/def-users/SHARED/trash_bin/EESSI/software-layer/2025.04.03

eessi-bot-trz42 · 2025-04-03T12:56:44Z

PR merged! Moved ['/p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_993/13554478', '/p/project1/ceasybuilders/bot-trz42/jobs/2025.04/pr_993/13553748'] to /p/project1/ceasybuilders/bot-trz42/trash_bin/EESSI/software-layer/2025.04.03

{2023.06}[2023b,grace] a couple of apps built with EB 4.9.4

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trz42 added 2023.06-software.eessi.io 2023.06 version of software.eessi.io grace NVIDIA Grace CPU labels Apr 2, 2025

trz42 mentioned this pull request Apr 2, 2025

Notes on building stack for NVIDIA Grace & Grace/Hopper #967

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trz42 added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Apr 3, 2025

TopRichard merged commit 29956d8 into EESSI:2023.06-software.eessi.io Apr 3, 2025
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trz42 mentioned this pull request Apr 10, 2025

avoiding SVE instructions for GROMACS <= 2024.1 on Neoverse V1 #557

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trz42 mentioned this pull request Apr 20, 2025

Notes on building the stack for Fujitsu A64FX #1024

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dagonzalezfo mentioned this pull request Aug 14, 2025

{2023.06}[2023b,a64fx] EB-4.9.4 additional packages #1154

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{2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993

{2023.06}[2023b,grace] a couple of apps built with EB 4.9.4 #993

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