{2023.06}[2023a,2023b] RStudio-Server 2023.09.1+494, RStudio-Server 2024.09.0+375

[PetrKralCZ]

3 out of 157 required modules missing:

* yaml-cpp/0.7.0-GCCcore-12.3.0 (yaml-cpp-0.7.0-GCCcore-12.3.0.eb)
* SOCI/4.0.3-GCC-12.3.0 (SOCI-4.0.3-GCC-12.3.0.eb)
* RStudio-Server/2023.09.1+494-foss-2023a-Java-11-R-4.3.2 (RStudio-Server-2023.09.1+494-foss-2023a-Java-11-R-4.3.2.eb)

1 out of 158 required modules missing:

* RStudio-Server/2024.09.0+375-foss-2023b-Java-11-R-4.4.1 (RStudio-Server-2024.09.0+375-foss-2023b-Java-11-R-4.4.1.eb)

[ocaisa]

I'm very wary of the fact that the recipe for Compute Canada for RStudio is not the same as the upstream recipe, in particular the patch https://github.com/ComputeCanada/easybuild-easyconfigs-installed-avx2/blob/main/2023/RStudio-Server/rstudio-1.2.1335.patch . I think it is worth exploring the differences before considering merging this.

[ocaisa]

@ccoulombe I used to know why that patch was necessary but I can't fully remember, can you help explain? I think it is needed so that you are able to use different R versions in the same session.

[ocaisa]

I'm very wary of the fact that the recipe for Compute Canada for RStudio is not the same as the upstream recipe, in particular the patch https://github.com/ComputeCanada/easybuild-easyconfigs-installed-avx2/blob/main/2023/RStudio-Server/rstudio-1.2.1335.patch . I think it is worth exploring the differences before considering merging this.

I see that patch is no longer applied to their latest builds so it may no longer be needed to worry about it. I'm willing to build and include it so we can actually test it out, if we need to rebuild later then so be it.

[ocaisa]

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

[eessi-bot-aws]

New job on instance eessi-bot-mc-aws for repository eessi.io-2023.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.11/pr_1194/102381

date	job status	comment
Nov 07 13:38:04 UTC 2025	submitted	job id 102381 awaits release by job manager
Nov 07 13:39:05 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 07 13:46:08 UTC 2025	running	job 102381 is running
Nov 07 15:12:34 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-102381.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-x86_64-amd-zen2-17625280780.tar.gz size: 84 MiB (88378736 bytes) entries: 2025 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all RStudio-Server/2024.09.0+375-foss-2023b-Java-11-R-4.4.1.lua SOCI/4.0.3-GCC-12.3.0.lua SOCI/4.0.3-GCC-13.2.0.lua yaml-cpp/0.7.0-GCCcore-12.3.0.lua yaml-cpp/0.8.0-GCCcore-13.2.0.lua software under 2023.06/software/linux/x86_64/amd/zen2/software RStudio-Server/2024.09.0+375-foss-2023b-Java-11-R-4.4.1 SOCI/4.0.3-GCC-12.3.0 SOCI/4.0.3-GCC-13.2.0 yaml-cpp/0.7.0-GCCcore-12.3.0 yaml-cpp/0.8.0-GCCcore-13.2.0 reprod directories under 2023.06/software/linux/x86_64/amd/zen2/reprod no reprod directories in tarball other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Nov 07 15:12:34 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ OK ] ( 1/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:x86_64_amd_zen2+default P: perf: 440.268 timesteps/s (r:0, l:None, u:None) [ OK ] ( 2/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:x86_64_amd_zen2+default P: perf: 446.578 timesteps/s (r:0, l:None, u:None) [ OK ] ( 3/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:x86_64_amd_zen2+default P: latency: 1.94 us (r:0, l:None, u:None) [ OK ] ( 4/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:x86_64_amd_zen2+default P: latency: 1.8 us (r:0, l:None, u:None) [ OK ] ( 5/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:x86_64_amd_zen2+default P: latency: 3.93 us (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:x86_64_amd_zen2+default P: latency: 4.19 us (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.61 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:x86_64_amd_zen2+default P: latency: 0.55 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 7436.48 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:x86_64_amd_zen2+default P: bandwidth: 7328.06 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file slurm-102381.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[eessi-bot-jsc]

New job on instance eessi-bot-jsc for repository eessi.io-2023.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.11/pr_1194/14190484

date	job status	comment
Nov 07 13:38:05 UTC 2025	submitted	job id 14190484 awaits release by job manager
Nov 07 13:38:57 UTC 2025	released	job awaits launch by Slurm scheduler
Nov 07 13:40:00 UTC 2025	running	job 14190484 is running
Nov 07 14:32:39 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file slurm-14190484.out ✅ no message matching FATAL: ❌ found message matching ERROR: ❌ found message matching FAILED: ❌ found message matching required modules missing: ✅ found message(s) matching No missing installations ✅ found message matching .tar.gz created! Artefacts eessi-2023.06-software-linux-aarch64-nvidia-grace-17625253590.tar.gz size: 84 MiB (88223899 bytes) entries: 2025 modules under 2023.06/software/linux/aarch64/nvidia/grace/modules/all RStudio-Server/2024.09.0+375-foss-2023b-Java-11-R-4.4.1.lua SOCI/4.0.3-GCC-12.3.0.lua SOCI/4.0.3-GCC-13.2.0.lua yaml-cpp/0.7.0-GCCcore-12.3.0.lua yaml-cpp/0.8.0-GCCcore-13.2.0.lua software under 2023.06/software/linux/aarch64/nvidia/grace/software RStudio-Server/2024.09.0+375-foss-2023b-Java-11-R-4.4.1 SOCI/4.0.3-GCC-12.3.0 SOCI/4.0.3-GCC-13.2.0 yaml-cpp/0.7.0-GCCcore-12.3.0 yaml-cpp/0.8.0-GCCcore-13.2.0 reprod directories under 2023.06/software/linux/aarch64/nvidia/grace/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/nvidia/grace no other files in tarball
Nov 07 14:32:39 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 2/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 3/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 4/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 5/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 6/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 7/28) Skipping GPU test : only 1 GPU available for this test case [ SKIP ] ( 8/28) Skipping GPU test : only 1 GPU available for this test case [ OK ] ( 9/28) EESSI_LAMMPS_lj %device_type=gpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /1f2ca7c1 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 6976.664 timesteps/s (r:0, l:None, u:None) [ OK ] (10/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1539.719 timesteps/s (r:0, l:None, u:None) [ OK ] (11/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1543.239 timesteps/s (r:0, l:None, u:None) [ OK ] (12/28) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos-CUDA-12.1.1 %scale=1_node /b22a48f5 @BotBuildTests:aarch64_nvidia_grace+default P: perf: 1534.187 timesteps/s (r:0, l:None, u:None) [ OK ] (13/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /775175bf @BotBuildTests:aarch64_nvidia_grace+default P: latency: 4.91 us (r:0, l:None, u:None) [ OK ] (14/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /52707c40 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.05 us (r:0, l:None, u:None) [ OK ] (15/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /95ac9526 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 10.93 us (r:0, l:None, u:None) [ OK ] (16/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_allreduce %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /1cff5d41 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 5.07 us (r:0, l:None, u:None) [ OK ] (17/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node %device_type=cpu /b1aacda9 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 6.97 us (r:0, l:None, u:None) [ OK ] (18/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node %device_type=cpu /c6bad193 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 7.25 us (r:0, l:None, u:None) [ OK ] (19/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node %device_type=cpu /0edb8a95 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.34 us (r:0, l:None, u:None) [ OK ] (20/28) EESSI_OSU_coll %benchmark_info=mpi.collective.osu_alltoall %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node %device_type=cpu /b2ab2213 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 8.52 us (r:0, l:None, u:None) [ OK ] (21/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.49 us (r:0, l:None, u:None) [ OK ] (22/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.5 us (r:0, l:None, u:None) [ OK ] (23/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /8ec94746 @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.52 us (r:0, l:None, u:None) [ OK ] (24/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /1a3a497b @BotBuildTests:aarch64_nvidia_grace+default P: latency: 0.48 us (r:0, l:None, u:None) [ OK ] (25/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42673.43 MB/s (r:0, l:None, u:None) [ OK ] (26/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 41412.96 MB/s (r:0, l:None, u:None) [ OK ] (27/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.5-gompi-2023b-CUDA-12.4.0 %scale=1_node /c9ca6dc1 @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42547.6 MB/s (r:0, l:None, u:None) [ OK ] (28/28) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023a-CUDA-12.1.1 %scale=1_node /17289b2f @BotBuildTests:aarch64_nvidia_grace+default P: bandwidth: 42609.54 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 20/28 test case(s) from 28 check(s) (0 failure(s), 8 skipped, 0 aborted) Details ✅ job output file slurm-14190484.out ❌ found message matching ERROR: ✅ no message matching [\s*FAILED\s*].*Ran .* test case

[ocaisa]

RStudio-Server-2023.09.1+494-foss-2023a-Java-11-R-4.3.2.eb failed with

panmirror:
     [echo] yarn location: ../../dependencies/common/node/16.20.2/bin/yarn
     [echo] panmirror location: ./lib/quarto/apps/panmirror
    [mkdir] Created dir: /tmp/eessibot/easybuild/build/RStudioServer/2023.09.1+494/foss-2023a-Java-11-R-4.3.2/rstudio-2023.09.1-494/src/gwt/www/js/panmirror
     [exec] yarn install v1.22.22
     [exec] [1/4] Resolving packages...
     [exec] [2/4] Fetching packages...
     [exec] info Visit https://yarnpkg.com/en/docs/cli/install for documentation about this command.
     [exec] error [email protected]: The engine "node" is incompatible with this module. Expected version "^18.18.0 || ^20.9.0 || >=21.1.0". Got "18.17.1"
     [exec] error Found incompatible module.

BUILD FAILED
/tmp/eessibot/easybuild/build/RStudioServer/2023.09.1+494/foss-2023a-Java-11-R-4.3.2/rstudio-2023.09.1-494/src/gwt/build.xml:175: The following error occurred
 while executing this line:
/tmp/eessibot/easybuild/build/RStudioServer/2023.09.1+494/foss-2023a-Java-11-R-4.3.2/rstudio-2023.09.1-494/src/gwt/build.xml:132: exec returned: 1

I don't see too much value in adding an old version so I will stick with supporting the later version and open a seperate PR

[ocaisa]

Splitting off the newer version into #1292