Accelerating the deduplication and collapsing process for reads with Unique Molecular Identifiers (UMI). Heavily optimized for scalability and orders of magnitude faster than a previous tool.
String matching algorithms for searching a single or multiple strings in large texts
String matching algorithm benchmark
Official sample code for the very fast Franek-Jennings-Smyth (FJS) full text string search algorithm
An efficient Java substring search library
A general, multi-threaded fuzzy searching language, called fuzzysplit, that is built on top of a fast and flexible Java fuzzy search library. Can be applied to demultiplex and trim DNA.
A CLI tool that indexes a given folder and allows efficient searching for string occurrences
HeadlineTextProcessor
A Text File Indexer that filters the text files in a given folder directory and indexes them enabling the user to show the already indexed files and retrieve the files containing a specific word (i.e. the user can search for a specific word effeicently fast).
Performance comparison between various String and Pattern operations in Java
Multi-search Java library
String program in java
Pesquisa de palavras chaves, apartir de arquivos pdf. Informando quantiadades de repetições da pesquisa.
My solutions for the challenges exercises from codingbat.com. Purpose: extra practice and solidify common code patterns
Effective string searching algorithm (Aho-Corasick).
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