COBRApy is a package for constraint-based modeling of metabolic networks.

A Python package for "classic" Constraint-Based Reconstruction and Analysis (COBRA) and the new COBRA with kinetics (COBRA-k). Link to documentation:

Python package and workflow for EFM calculation via (mp)lrs and efmtool

sbml2hyb is a tool for SBML compatible hybrid modelling of biological systems

A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.

Glimepiride Web Application