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openslide

Here are 16 public repositories matching this topic...

zhaoxuanma / Deeplearning-digital-pathology

Full package for applying deep learning to virtual slides.

caffe deep-learning tensorflow keras openslide digital-pathology

Updated Sep 7, 2018
Python

smujiang / WSITools

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

extraction image-processing patch openslide digital-pathology wis pathological

Updated Dec 10, 2024
Python

lucasrla / wsi-preprocessing

Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning

pytorch libvips preprocessing fastai openslide pathology whole-slide-imaging wsi histopathology pyvips

Updated Sep 25, 2023
Python

jgamper / compay-syntax

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

slide-images medical-imaging openslide whole-slide-imaging computational-pathology pathology-image wsis whole-slide-image

Updated Nov 22, 2022
Python

DIMAthe47 / slide_viewer_47

A pyqt5 widget for viewing whole-slide images with Openslide

pyqt5 python3 openslide whole-slide-imaging

Updated Feb 3, 2018
Python

jopo666 / HistoPrep

Preprocessing module for large histological images

medical-imaging cut preprocess openslide medical-image-processing tissue-classification pathology medical-image-analysis histological-images pathology-image tissue-analysis histological-slides slide-image

Updated Jun 16, 2023
Python

python-sdk

aignostics / python-sdk

🔬 Python SDK providing access to the Aignostics Platform. Includes Aignostics Launchpad (Desktop Application), Aignostics CLI (Command-Line Interface), example notebooks, and Aignostics Client Library.

machine-learning dicom medical-imaging atlas typer pydicom openslide digital-pathology whole-slide-imaging uv pydantic qupath nicegui marimo oe-python-template aignostics image-data-commons

Updated Nov 21, 2025
Python

shaziaakbar / deep-openslide

A library for training deep neural networks using pathology data by accessing patches on-the-fly

openslide pathology

Updated Oct 12, 2018
Python

eipm / CIN

ai openslide tensorflow2

Updated Jan 15, 2021
Python

arquolo / bipl

Big Image Python Library

python computer-vision tiff image-processing openslide

Updated Sep 4, 2025
Python

DIMAthe47 / slide_list_view_47

A pyqt5 widget for viewing collection of whole-slide images with Openslide

listview pyqt5 python3 openslide whole-slide-imaging

Updated Feb 3, 2018
Python

BioImageInformatics / svs_reader

Convenient interface for generating tiles from Aperio SVS format images

opencv tensorflow openslide svs digital-pathology tensorflow-data-pipeline aperio

Updated Jun 4, 2019
Python

DIMAthe47 / slide_cbir_47

A pyqt5 GUI for CBIR in whole-slide images with Openslide

pyqt5 python3 cbir openslide whole-slide-imaging

Updated Feb 3, 2018
Python

brian220 / SvsScanner

Use the openslide Library to process the WSI image

openslide wsi-images

Updated Aug 15, 2018
Python

Dart9000 / OpenX

Digital Open-source pathology tool based on OpenSlide with Manipulation & annotations feature.

openseadragon openslide openseadragonannotation

Updated Jan 17, 2022
Python

schlauerlauer / openslides-docker

docker container openslide openslide-python podman

Updated Aug 29, 2022
Python

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