mutect2

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This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

snakemake mutations somatic mutect2 gatk4

Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2

A Snakemake pipeline for copy number variant calling without normal tissue samples

bioinformatics snakemake conda cnv bwa panels cna mutect2 targeted-sequencing sequencing-data cnvkit copynumbervariation purecn

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