Feat (setup tool): Create default files for the new setup tool #7444

CarolineDenis · 2025-09-23T19:20:29Z

Fixes #7438

Checklist

Self-review the PR after opening it to make sure the changes look good and
self-explanatory (or properly documented)
Add relevant issue to release milestone

Testing instructions

…types.json

config/common/picklists.json

config/common/storage_tree.json

…common

config/common/geography_tree.json

…fig/common

config/common/global_picklists.json

… in config/bird

config/bird/taxon_bird_tree.json

…disc in config/botany

config/botany/taxon_botany_tree.json

… in config/fish

…rpetology disc in config/herpetology

…disc in config/insect

…nvertebrate disc in config/invertebrate

…erpaleo disc in config/inverpaleo

…disc in config/mammal

…e disc in config/reptile

…plant disc in config/vascplant

config/vascplant/taxon_vascplant_tree.json

See https://registry.gbif.org/vocabulary/LifeStage/concepts

Adds items to Bird collecting method based on GBIF samplingMethod

Replaces the need to create them in the `default_cots.py` logic

Replaces the need to create in `0004_stratigraphy_age`

config/common/picklists.json

config/common/prep_types.json

Triggered by 808f0ee on branch refs/heads/issue-7438

CarolineDenis added 2 commits September 23, 2025 15:18

feat(prep-types): add discipline-specific prep_types in default prep_…

16dd9cc

…types.json

feat(picklists): add discipline-specific pick lists in picklists.json

8bb21e4

CarolineDenis added this to the 7.12.0 milestone Sep 23, 2025

github-project-automation bot added this to General Tester Board Sep 23, 2025

github-project-automation bot moved this to 📋Back Log in General Tester Board Sep 23, 2025

CarolineDenis changed the title ~~Issue 7438~~ Feat (setup tool): Create default files for the new setup tool Sep 23, 2025

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/picklists.json Outdated Show resolved Hide resolved

feat(storage_tree): add default storage tree JSON file in config/common

67d8b41

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/storage_tree.json Outdated Show resolved Hide resolved

feat(geography_tree): add default geography tree JSON file in config/…

1cf3be2

…common

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/geography_tree.json Outdated Show resolved Hide resolved

feat(global_picklists): add default global picklists JSON file in con…

d5bc384

…fig/common

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/global_picklists.json Outdated Show resolved Hide resolved

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/global_picklists.json Outdated Show resolved Hide resolved

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/global_picklists.json Outdated Show resolved Hide resolved

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/global_picklists.json Show resolved Hide resolved

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/common/global_picklists.json Outdated Show resolved Hide resolved

feat(taxon_bird_tree): add default taxon tree JSON file for bird disc…

190b440

… in config/bird

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/bird/taxon_bird_tree.json Outdated Show resolved Hide resolved

feat(taxon_botany_tree): add default taxon tree JSON file for botany …

0e3e5db

…disc in config/botany

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/botany/taxon_botany_tree.json Outdated Show resolved Hide resolved

CarolineDenis added 8 commits September 24, 2025 09:45

feat(taxon_fish_tree): add default taxon tree JSON file for fish disc…

9f2690b

… in config/fish

feat(taxon_herpetology_tree): add default taxon tree JSON file for he…

8e58f49

…rpetology disc in config/herpetology

feat(taxon_insect_tree): add default taxon tree JSON file for insect …

1e7a87c

…disc in config/insect

feat(taxon_invertebrate_tree): add default taxon tree JSON file for i…

df3e532

…nvertebrate disc in config/invertebrate

feat(taxon_inverpaleo_tree): add default taxon tree JSON file for inv…

b78a7c7

…erpaleo disc in config/inverpaleo

feat(taxon_mammal_tree): add default taxon tree JSON file for mammal …

bb2316a

…disc in config/mammal

feat(taxon_reptile_tree): add default taxon tree JSON file for reptil…

38ddc93

…e disc in config/reptile

feat(taxon_vascplant_tree): add default taxon tree JSON file for vasc…

0939d27

…plant disc in config/vascplant

CarolineDenis commented Sep 24, 2025

View reviewed changes

config/vascplant/taxon_vascplant_tree.json Outdated Show resolved Hide resolved

grantfitzsimmons added 18 commits September 25, 2025 16:13

feat(insect): integrate suggestions and remove text fields

be54891

feat(invertpaleo): integrate suggestions

db78d53

feat(invertebrate): integrate suggestions

8da551f

feat(dwc): use GBIF LifeStage vocabulary

e9df92a

See https://registry.gbif.org/vocabulary/LifeStage/concepts

feat(picklists): make all picklists proper case

b59d676

feat(dwc): remove name usages

a113f8d

feat(insect): add new collecting methods

fee44e1

feat(dwc): add reasonable defaults to method

c021c39

feat(dwc): standardize picklists

1141278

Adds items to Bird collecting method based on GBIF samplingMethod

feat(mammal): extend age picklist

aeb2d43

feat(dwc): standardize typestatus

62b8a0e

feat(schema): add AgentIdentifierType to defaults

3d1d9bb

feat(forms): add conditional logic to agentidentifier

be2f21a

fix: descriptions

a77a95e

feat(datamodel): create SystemCOGTypes automatically

56e1018

Replaces the need to create them in the `default_cots.py` logic

feat(datamodel): create AgeType automatically

9d1e4b2

Replaces the need to create in `0004_stratigraphy_age`

feat(picklists): standardize prep types

249c17a

feat(schema): hide invisible fields

b4dc875

CarolineDenis commented Oct 2, 2025

View reviewed changes

config/common/picklists.json Outdated Show resolved Hide resolved

CarolineDenis commented Oct 2, 2025

View reviewed changes

config/common/picklists.json Outdated Show resolved Hide resolved

CarolineDenis commented Oct 2, 2025

View reviewed changes

config/common/prep_types.json Outdated Show resolved Hide resolved

CarolineDenis added 5 commits October 2, 2025 09:46

Update prep_types.json

b7abfc6

Update picklists.json

7f940d2

Update picklists.json

8d63d17

Merge branch 'main' into issue-7438

808f0ee

Lint code with ESLint and Prettier

76b873a

Triggered by 808f0ee on branch refs/heads/issue-7438

CarolineDenis merged commit 9b14f6f into main Oct 2, 2025
14 checks passed

CarolineDenis deleted the issue-7438 branch October 2, 2025 14:26

github-project-automation bot moved this from 📋Back Log to ✅Done in General Tester Board Oct 2, 2025

alesan99 mentioned this pull request Oct 2, 2025

Create a new setup page #6671

Draft

45 tasks

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Uh oh!

Uh oh!

Feat (setup tool): Create default files for the new setup tool #7444

Feat (setup tool): Create default files for the new setup tool #7444

CarolineDenis commented Sep 23, 2025

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

2 participants

Uh oh!

Feat (setup tool): Create default files for the new setup tool #7444

Feat (setup tool): Create default files for the new setup tool #7444

Conversation

CarolineDenis commented Sep 23, 2025

Checklist

Testing instructions

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Uh oh!

Reviewers

Assignees

Labels

Projects

Milestone

Development

Uh oh!

2 participants