numpy version fix/upgrade [v3.9.43] #90

softwareengineerprogrammer · 2025-07-28T16:22:26Z

Description

Use latest versions for:

Tangentially relevant to NREL#117

Resolves issues per https://gist.github.com/softwareengineerprogrammer/3d650c511ad5e674a36e8bc121ebabe5

Testing & Verification

Existing tests pass except for slight adjustment to cases to allow almost equal
Tested locally on a separate project as a dependency:

(venv) ➜  git:(main) ✗ pip install -r requirements.txt 
Collecting https://github.com/softwareengineerprogrammer/GEOPHIRES/archive/v3.9.43.zip (from -r requirements.txt (line 2))
  Downloading https://github.com/softwareengineerprogrammer/GEOPHIRES/archive/v3.9.43.zip
     \ 76.7 MB 16.6 MB/s 0:00:04
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Preparing metadata (pyproject.toml) ... done
Collecting numpy (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached numpy-2.3.2-cp313-cp313-macosx_14_0_arm64.whl.metadata (62 kB)
Collecting numpy-financial (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached numpy_financial-1.0.0-py3-none-any.whl.metadata (2.2 kB)
Collecting pint (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached Pint-0.24.4-py3-none-any.whl.metadata (8.5 kB)
Collecting forex_python (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached forex_python-1.9.2-py3-none-any.whl.metadata (4.6 kB)
Collecting jsons (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached jsons-1.6.3-py3-none-any.whl.metadata (9.3 kB)
Collecting mpmath (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB)
Collecting deepdiff (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached deepdiff-8.5.0-py3-none-any.whl.metadata (8.2 kB)
Collecting mysql.connector (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached mysql_connector-2.2.9-cp313-cp313-macosx_15_0_arm64.whl
Collecting cryptography (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached cryptography-45.0.5-cp311-abi3-macosx_10_9_universal2.whl.metadata (5.7 kB)
Collecting pandas (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pandas-2.3.1-cp313-cp313-macosx_11_0_arm64.whl.metadata (91 kB)
Collecting matplotlib (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached matplotlib-3.10.3-cp313-cp313-macosx_11_0_arm64.whl.metadata (11 kB)
Collecting h5py (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached h5py-3.14.0-cp313-cp313-macosx_11_0_arm64.whl.metadata (2.7 kB)
Collecting scipy (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached scipy-1.16.1-cp313-cp313-macosx_14_0_arm64.whl.metadata (61 kB)
Collecting iapws (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached iapws-1.5.4-py3-none-any.whl
Collecting coolprop (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached coolprop-6.8.0-cp313-cp313-macosx_11_0_arm64.whl.metadata (282 bytes)
Collecting rich (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached rich-14.1.0-py3-none-any.whl.metadata (18 kB)
Collecting pylocker (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pylocker-3.1.0-py3-none-any.whl.metadata (1.6 kB)
Collecting nrel-pysam (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached NREL_PySAM-7.0.0-cp313-cp313-macosx_12_0_arm64.whl.metadata (8.8 kB)
Collecting tabulate (from geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached tabulate-0.9.0-py3-none-any.whl.metadata (34 kB)
Collecting cffi>=1.14 (from cryptography->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached cffi-1.17.1-cp313-cp313-macosx_11_0_arm64.whl.metadata (1.5 kB)
Collecting pycparser (from cffi>=1.14->cryptography->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Collecting orderly-set<6,>=5.4.1 (from deepdiff->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached orderly_set-5.5.0-py3-none-any.whl.metadata (6.6 kB)
Collecting requests>=2.0 (from forex_python->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached requests-2.32.4-py3-none-any.whl.metadata (4.9 kB)
Collecting simplejson>=3.0 (from forex_python->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached simplejson-3.20.1-cp313-cp313-macosx_11_0_arm64.whl.metadata (3.3 kB)
Collecting charset_normalizer<4,>=2 (from requests>=2.0->forex_python->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached charset_normalizer-3.4.2-cp313-cp313-macosx_10_13_universal2.whl.metadata (35 kB)
Collecting idna<4,>=2.5 (from requests>=2.0->forex_python->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached idna-3.10-py3-none-any.whl.metadata (10 kB)
Collecting urllib3<3,>=1.21.1 (from requests>=2.0->forex_python->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached urllib3-2.5.0-py3-none-any.whl.metadata (6.5 kB)
Collecting certifi>=2017.4.17 (from requests>=2.0->forex_python->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached certifi-2025.7.14-py3-none-any.whl.metadata (2.4 kB)
Collecting typish>=1.9.2 (from jsons->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached typish-1.9.3-py3-none-any.whl.metadata (7.2 kB)
Collecting contourpy>=1.0.1 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached contourpy-1.3.3-cp313-cp313-macosx_11_0_arm64.whl.metadata (5.5 kB)
Collecting cycler>=0.10 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached fonttools-4.59.0-cp313-cp313-macosx_10_13_universal2.whl.metadata (107 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached kiwisolver-1.4.8-cp313-cp313-macosx_11_0_arm64.whl.metadata (6.2 kB)
Collecting packaging>=20.0 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
Collecting pillow>=8 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pillow-11.3.0-cp313-cp313-macosx_11_0_arm64.whl.metadata (9.0 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pyparsing-3.2.3-py3-none-any.whl.metadata (5.0 kB)
Collecting python-dateutil>=2.7 (from matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB)
Collecting pytz>=2020.1 (from pandas->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB)
Collecting tzdata>=2022.7 (from pandas->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached tzdata-2025.2-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting platformdirs>=2.1.0 (from pint->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached platformdirs-4.3.8-py3-none-any.whl.metadata (12 kB)
Collecting typing-extensions>=4.0.0 (from pint->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached typing_extensions-4.14.1-py3-none-any.whl.metadata (3.0 kB)
Collecting flexcache>=0.3 (from pint->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached flexcache-0.3-py3-none-any.whl.metadata (7.0 kB)
Collecting flexparser>=0.4 (from pint->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached flexparser-0.4-py3-none-any.whl.metadata (18 kB)
Collecting psutil (from pylocker->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached psutil-7.0.0-cp36-abi3-macosx_11_0_arm64.whl.metadata (22 kB)
Collecting markdown-it-py>=2.2.0 (from rich->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached markdown_it_py-3.0.0-py3-none-any.whl.metadata (6.9 kB)
Collecting pygments<3.0.0,>=2.13.0 (from rich->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached pygments-2.19.2-py3-none-any.whl.metadata (2.5 kB)
Collecting mdurl~=0.1 (from markdown-it-py>=2.2.0->rich->geophires-x==3.9.43->-r requirements.txt (line 2))
  Using cached mdurl-0.1.2-py3-none-any.whl.metadata (1.6 kB)
Using cached coolprop-6.8.0-cp313-cp313-macosx_11_0_arm64.whl (5.8 MB)
Using cached cryptography-45.0.5-cp311-abi3-macosx_10_9_universal2.whl (7.0 MB)
Using cached cffi-1.17.1-cp313-cp313-macosx_11_0_arm64.whl (178 kB)
Using cached deepdiff-8.5.0-py3-none-any.whl (85 kB)
Using cached orderly_set-5.5.0-py3-none-any.whl (13 kB)
Using cached forex_python-1.9.2-py3-none-any.whl (9.5 kB)
Using cached requests-2.32.4-py3-none-any.whl (64 kB)
Using cached charset_normalizer-3.4.2-cp313-cp313-macosx_10_13_universal2.whl (199 kB)
Using cached idna-3.10-py3-none-any.whl (70 kB)
Using cached urllib3-2.5.0-py3-none-any.whl (129 kB)
Using cached certifi-2025.7.14-py3-none-any.whl (162 kB)
Using cached simplejson-3.20.1-cp313-cp313-macosx_11_0_arm64.whl (75 kB)
Using cached h5py-3.14.0-cp313-cp313-macosx_11_0_arm64.whl (2.8 MB)
Using cached numpy-2.3.2-cp313-cp313-macosx_14_0_arm64.whl (5.1 MB)
Using cached scipy-1.16.1-cp313-cp313-macosx_14_0_arm64.whl (20.8 MB)
Using cached jsons-1.6.3-py3-none-any.whl (60 kB)
Using cached typish-1.9.3-py3-none-any.whl (45 kB)
Using cached matplotlib-3.10.3-cp313-cp313-macosx_11_0_arm64.whl (8.1 MB)
Using cached contourpy-1.3.3-cp313-cp313-macosx_11_0_arm64.whl (274 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.59.0-cp313-cp313-macosx_10_13_universal2.whl (2.8 MB)
Using cached kiwisolver-1.4.8-cp313-cp313-macosx_11_0_arm64.whl (65 kB)
Using cached packaging-25.0-py3-none-any.whl (66 kB)
Using cached pillow-11.3.0-cp313-cp313-macosx_11_0_arm64.whl (4.7 MB)
Using cached pyparsing-3.2.3-py3-none-any.whl (111 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached six-1.17.0-py2.py3-none-any.whl (11 kB)
Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Using cached NREL_PySAM-7.0.0-cp313-cp313-macosx_12_0_arm64.whl (35.5 MB)
Using cached numpy_financial-1.0.0-py3-none-any.whl (14 kB)
Using cached pandas-2.3.1-cp313-cp313-macosx_11_0_arm64.whl (10.7 MB)
Using cached pytz-2025.2-py2.py3-none-any.whl (509 kB)
Using cached tzdata-2025.2-py2.py3-none-any.whl (347 kB)
Using cached Pint-0.24.4-py3-none-any.whl (302 kB)
Using cached flexcache-0.3-py3-none-any.whl (13 kB)
Using cached flexparser-0.4-py3-none-any.whl (27 kB)
Using cached platformdirs-4.3.8-py3-none-any.whl (18 kB)
Using cached typing_extensions-4.14.1-py3-none-any.whl (43 kB)
Using cached pycparser-2.22-py3-none-any.whl (117 kB)
Using cached pylocker-3.1.0-py3-none-any.whl (38 kB)
Using cached psutil-7.0.0-cp36-abi3-macosx_11_0_arm64.whl (239 kB)
Using cached rich-14.1.0-py3-none-any.whl (243 kB)
Using cached pygments-2.19.2-py3-none-any.whl (1.2 MB)
Using cached markdown_it_py-3.0.0-py3-none-any.whl (87 kB)
Using cached mdurl-0.1.2-py3-none-any.whl (10.0 kB)
Using cached tabulate-0.9.0-py3-none-any.whl (35 kB)
Building wheels for collected packages: geophires-x
  Building wheel for geophires-x (pyproject.toml) ... done
  Created wheel for geophires-x: filename=geophires_x-3.9.43-py3-none-any.whl size=75623500 sha256=a911f29d06d8ac1134e4a97dd026ea3cbdc03ce5286c93a28a1ee3351e546f49
  Stored in directory: /private/var/folders/v9/kghhwkw949n1bbr4tj1hq9b00000gn/T/pip-ephem-wheel-cache-i2pxqkzx/wheels/7f/e2/40/35ee10722c3ad5d459639ab9388f3e5462910777ad396d5732
Successfully built geophires-x
Installing collected packages: typish, pytz, nrel-pysam, mysql.connector, mpmath, coolprop, urllib3, tzdata, typing-extensions, tabulate, six, simplejson, pyparsing, pygments, pycparser, psutil, platformdirs, pillow, packaging, orderly-set, numpy, mdurl, kiwisolver, jsons, idna, fonttools, cycler, charset_normalizer, certifi, scipy, requests, python-dateutil, pylocker, numpy-financial, markdown-it-py, h5py, flexparser, flexcache, deepdiff, contourpy, cffi, rich, pint, pandas, matplotlib, iapws, forex_python, cryptography, geophires-x
Successfully installed certifi-2025.7.14 cffi-1.17.1 charset_normalizer-3.4.2 contourpy-1.3.3 coolprop-6.8.0 cryptography-45.0.5 cycler-0.12.1 deepdiff-8.5.0 flexcache-0.3 flexparser-0.4 fonttools-4.59.0 forex_python-1.9.2 geophires-x-3.9.43 h5py-3.14.0 iapws-1.5.4 idna-3.10 jsons-1.6.3 kiwisolver-1.4.8 markdown-it-py-3.0.0 matplotlib-3.10.3 mdurl-0.1.2 mpmath-1.3.0 mysql.connector-2.2.9 nrel-pysam-7.0.0 numpy-2.3.2 numpy-financial-1.0.0 orderly-set-5.5.0 packaging-25.0 pandas-2.3.1 pillow-11.3.0 pint-0.24.4 platformdirs-4.3.8 psutil-7.0.0 pycparser-2.22 pygments-2.19.2 pylocker-3.1.0 pyparsing-3.2.3 python-dateutil-2.9.0.post0 pytz-2025.2 requests-2.32.4 rich-14.1.0 scipy-1.16.1 simplejson-3.20.1 six-1.17.0 tabulate-0.9.0 typing-extensions-4.14.1 typish-1.9.3 tzdata-2025.2 urllib3-2.5.0

Updated web interface backend with v3.9.43

…hat allow almost-equal (https://github.com/softwareengineerprogrammer/GEOPHIRES/actions/runs/16574485064/job/46875231813)

…oftwareengineerprogrammer/GEOPHIRES/actions/runs/16575792951/job/46879645848)

softwareengineerprogrammer added 3 commits July 28, 2025 09:06

drop numpy version specifier for python > 3.8

4858761

drop h5py version specifier

6eec981

replace deprecated usage of np.can_cast with is_float in utils

bd3b96c

softwareengineerprogrammer added the bug Something isn't working label Jul 28, 2025

softwareengineerprogrammer added 2 commits July 28, 2025 10:08

Add Beckers_et_al_2023_Tabulated_Database_Uloop_water_elec to cases t…

ccffafb

…hat allow almost-equal (https://github.com/softwareengineerprogrammer/GEOPHIRES/actions/runs/16574485064/job/46875231813)

Switch almost equal comparison to 0.00001% instead of 1 place

f47daa8

softwareengineerprogrammer changed the title ~~Numpy version fix~~ Numpy version fix/upgrade Jul 28, 2025

softwareengineerprogrammer added 2 commits July 28, 2025 10:34

Calibrate allowed-almost-equal percent to 0.01% (https://github.com/s…

15786aa

…oftwareengineerprogrammer/GEOPHIRES/actions/runs/16575792951/job/46879645848)

Bump version: 3.9.42 → 3.9.43

ef7dac7

softwareengineerprogrammer changed the title ~~Numpy version fix/upgrade~~ numpy version fix/upgrade [v3.9.43] Jul 28, 2025

softwareengineerprogrammer merged commit 071744d into main Jul 28, 2025
36 checks passed

softwareengineerprogrammer mentioned this pull request Jul 28, 2025

numpy version fix/upgrade [v3.9.43] NREL/GEOPHIRES-X#409

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numpy version fix/upgrade [v3.9.43] #90

numpy version fix/upgrade [v3.9.43] #90

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softwareengineerprogrammer commented Jul 28, 2025 •

edited

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numpy version fix/upgrade [v3.9.43] #90

numpy version fix/upgrade [v3.9.43] #90

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Description

Testing & Verification

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softwareengineerprogrammer commented Jul 28, 2025 •

edited

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