Skip to content
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 3 additions & 3 deletions pymc/backends/arviz.py
Original file line number Diff line number Diff line change
Expand Up @@ -131,9 +131,9 @@ def dict_to_dataset(
for name, vals in data.items():
vals = np.atleast_1d(vals)
val_dims = dims.get(name)
val_dims, coords = generate_dims_coords(vals.shape, name, dims=val_dims, coords=coords)
coords = {key: xr.IndexVariable((key,), data=coords[key]) for key in val_dims}
out_data[name] = xr.DataArray(vals, dims=val_dims, coords=coords)
val_dims, crds = generate_dims_coords(vals.shape, name, dims=val_dims, coords=coords)
crds = {key: xr.IndexVariable((key,), data=crds[key]) for key in val_dims}
out_data[name] = xr.DataArray(vals, dims=val_dims, coords=crds)
return xr.Dataset(data_vars=out_data, attrs=make_attrs(attrs=attrs, library=library))


Expand Down
30 changes: 30 additions & 0 deletions pymc/tests/test_idata_conversion.py
Original file line number Diff line number Diff line change
Expand Up @@ -568,6 +568,36 @@ def test_multivariate_observations(self):
assert "direction" not in idata.log_likelihood.dims
assert "direction" in idata.observed_data.dims

def test_constant_data_coords_issue_5046(self):
"""This is a regression test against a bug where a local coords variable was overwritten."""
dims = {
"alpha": ["backwards"],
"bravo": ["letters", "yesno"],
}
coords = {
"backwards": np.arange(17)[::-1],
"letters": list("ABCDEFGHIJK"),
"yesno": ["yes", "no"],
}
data = {
name: np.random.uniform(size=[len(coords[dn]) for dn in dnames])
for name, dnames in dims.items()
}

for k in data:
assert len(data[k].shape) == len(dims[k])

ds = pm.backends.arviz.dict_to_dataset(
data=data,
library=pm,
coords=coords,
dims=dims,
default_dims=[],
index_origin=0,
)
for dname, cvals in coords.items():
np.testing.assert_array_equal(ds[dname].values, cvals)


class TestPyMCWarmupHandling:
@pytest.mark.parametrize("save_warmup", [False, True])
Expand Down