Skip to content

BLD: add support for pytables 3.1 #6268

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 1 commit into from
Feb 13, 2014
Merged

BLD: add support for pytables 3.1 #6268

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions ci/requirements-3.3.txt
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -6,8 +6,8 @@ xlrd==0.9.2
html5lib==1.0b2
numpy==1.8.0
cython==0.19.1
numexpr==2.1
tables==3.0.0
numexpr==2.3
tables==3.1.0
matplotlib==1.2.1
patsy==0.1.0
lxml==3.2.1
Expand Down
22 changes: 21 additions & 1 deletion pandas/io/tests/test_pytables.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -1449,7 +1449,7 @@ def col(t,column):
tables.__version__ = v
self.assertRaises(Exception, store.create_table_index, 'f')

for v in ['2.3.1', '2.3.1b', '2.4dev', '2.4', original]:
for v in ['2.3.1', '2.3.1b', '2.4dev', '2.4', '3.0.0', '3.1.0', original]:
pytables._table_mod = None
pytables._table_supports_index = False
tables.__version__ = v
Expand Down Expand Up @@ -3732,6 +3732,26 @@ def test_select_as_multiple(self):
self.assertRaises(ValueError, store.select_as_multiple,
['df1','df3'], where=['A>0', 'B>0'], selector='df1')


def test_nan_selection_bug_4858(self):

# GH 4858; nan selection bug, only works for pytables >= 3.1
if LooseVersion(tables.__version__) < '3.1.0':
raise nose.SkipTest('tables version does not support fix for nan selection bug: GH 4858')

with ensure_clean_store(self.path) as store:

df = DataFrame(dict(cols = range(6), values = range(6)), dtype='float64')
df['cols'] = (df['cols']+10).apply(str)
df.iloc[0] = np.nan

expected = DataFrame(dict(cols = ['13.0','14.0','15.0'], values = [3.,4.,5.]), index=[3,4,5])

# write w/o the index on that particular column
store.append('df',df, data_columns=True,index=['cols'])
result = store.select('df',where='values>2.0')
assert_frame_equal(result,expected)

def test_start_stop(self):

with ensure_clean_store(self.path) as store:
Expand Down