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Fix bugs with fsl_out=True and lta_out=True #3583

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Merged
merged 5 commits into from
Jul 5, 2023
Merged

Fix bugs with fsl_out=True and lta_out=True #3583

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86cf4ac
'fsl_out' and 'lta_out' options in TKregister2 should check and add a…
jadecci Jun 26, 2023
bf4bdcb
Add contribution
Jun 26, 2023
9e57827
Simplify fix for Tkregister2._format_arg
jadecci Jun 26, 2023
c515dc0
Update .zenodo.json
jadecci Jul 5, 2023
46554ac
Merge branch 'master' into master
effigies Jul 5, 2023
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7 changes: 6 additions & 1 deletion .zenodo.json
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Original file line number Diff line number Diff line change
Expand Up @@ -900,7 +900,12 @@
"affiliation": "University of Tübingen and MPI for Biological Cybernertics",
"name": "Bannert, Michael M.",
"orcid": "0000-0003-1010-7517"
}
},
{
"affiliation": "Research Centre Juelich",
"name": "Wu, Jianxiao",
"orcid": "0000-0002-4866-272X",
},
],
"keywords": [
"neuroimaging",
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2 changes: 1 addition & 1 deletion nipype/interfaces/freesurfer/utils.py
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Expand Up @@ -1966,7 +1966,7 @@ def _format_arg(self, name, spec, value):
if name == "lta_in" and self.inputs.invert_lta_in:
spec = "--lta-inv %s"
if name in ("fsl_out", "lta_out") and value is True:
value = self._list_outputs()[name]
value = self._list_outputs()[f'{name[:3]}_file']
return super()._format_arg(name, spec, value)

def _list_outputs(self):
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