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FIX: Typo in "antsRegistrationSyNQuick.sh" #2544

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merged 2 commits into from
Apr 17, 2018
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FIX: Typo in "antsRegistrationSyNQuick.sh" #2544

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c778f70
FIX: Typo in "antsRegistrationSyNQuick.sh"
effigies Apr 16, 2018
1ce0b28
DOC: Typo
effigies Apr 17, 2018
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11 changes: 5 additions & 6 deletions nipype/interfaces/ants/registration.py
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Original file line number Diff line number Diff line change
Expand Up @@ -1556,7 +1556,7 @@ class RegistrationSynQuick(ANTSCommand):
>>> reg.inputs.moving_image = 'moving1.nii'
>>> reg.inputs.num_threads = 2
>>> reg.cmdline
'antsRegistrationSynQuick.sh -d 3 -f fixed1.nii -m moving1.nii -n 2 -o transform -p d -t s'
'antsRegistrationSyNQuick.sh -d 3 -f fixed1.nii -m moving1.nii -n 2 -o transform -p d -t s'
>>> reg.run() # doctest: +SKIP

example for multiple images
Expand All @@ -1567,19 +1567,18 @@ class RegistrationSynQuick(ANTSCommand):
>>> reg.inputs.moving_image = ['moving1.nii', 'moving2.nii']
>>> reg.inputs.num_threads = 2
>>> reg.cmdline
'antsRegistrationSynQuick.sh -d 3 -f fixed1.nii -f fixed2.nii -m moving1.nii -m moving2.nii -n 2 -o transform -p d -t s'
'antsRegistrationSyNQuick.sh -d 3 -f fixed1.nii -f fixed2.nii -m moving1.nii -m moving2.nii -n 2 -o transform -p d -t s'
>>> reg.run() # doctest: +SKIP
"""


_cmd = 'antsRegistrationSynQuick.sh'
_cmd = 'antsRegistrationSyNQuick.sh'
input_spec = RegistrationSynQuickInputSpec
output_spec = RegistrationSynQuickOutputSpec

def _num_threads_update(self):
"""
antsRegistrationSynQuick.sh ignores environment variables,
so override environment update frm ANTSCommand class
antsRegistrationSyNQuick.sh ignores environment variables,
so override environment update from ANTSCommand class
"""
pass

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