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[FIX] Add -mas argument to fsl.utils.ImageMaths #2529

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Merged
merged 1 commit into from
Apr 4, 2018
Merged

[FIX] Add -mas argument to fsl.utils.ImageMaths #2529

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5 changes: 3 additions & 2 deletions nipype/interfaces/fsl/tests/test_auto_ImageMaths.py
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Original file line number Diff line number Diff line change
Expand Up @@ -24,19 +24,20 @@ def test_ImageMaths_inputs():
argstr='%s',
position=3,
),
mask_file=dict(argstr='-mas %s', ),
op_string=dict(
argstr='%s',
position=2,
),
out_data_type=dict(
argstr='-odt %s',
position=5,
position=-1,
),
out_file=dict(
argstr='%s',
genfile=True,
hash_files=False,
position=4,
position=-2,
),
output_type=dict(),
suffix=dict(),
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6 changes: 4 additions & 2 deletions nipype/interfaces/fsl/utils.py
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Expand Up @@ -500,7 +500,9 @@ def _list_outputs(self):
class ImageMathsInputSpec(FSLCommandInputSpec):
in_file = File(exists=True, argstr="%s", mandatory=True, position=1)
in_file2 = File(exists=True, argstr="%s", position=3)
out_file = File(argstr="%s", position=4, genfile=True, hash_files=False)
mask_file = File(exists=True, argstr='-mas %s',
desc='use (following image>0) to mask current image')
out_file = File(argstr="%s", position=-2, genfile=True, hash_files=False)
op_string = traits.Str(
argstr="%s",
position=2,
Expand All @@ -514,7 +516,7 @@ class ImageMathsInputSpec(FSLCommandInputSpec):
'double',
'input',
argstr="-odt %s",
position=5,
position=-1,
desc=("output datatype, one of (char, short, "
"int, float, double, input)"))

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