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DOC: Update references to new nipreps GH organization #2191

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Jun 18, 2020
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DOC: Update references to new nipreps GH organization #2191

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4 changes: 2 additions & 2 deletions CHANGES.rst
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Expand Up @@ -357,7 +357,7 @@ Bug-fix release in the 1.5.x series.
This release fixes a bug specifically for T1w images with dimensions ≤256 voxels
but a field-of-view >256mm.

* FIX: Calculate FoV with shape and zooms (poldracklab/smriprep#161)
* FIX: Calculate FoV with shape and zooms (nipreps/smriprep#161)

1.5.6 (January 22, 2020)
------------------------
Expand Down Expand Up @@ -622,7 +622,7 @@ Hotfix release intended for Singularity users. For further detail, please see
1.3.0 (February 7, 2019)
------------------------
We start the 1.3.x series including a few bugfixes, housekeeping duty and a refactors
to leverage `sMRIPrep <https://github.com/poldracklab/smriprep>`__ (which is a fork of
to leverage `sMRIPrep <https://github.com/nipreps/smriprep>`__ (which is a fork of
fMRIPrep's anatomical workflow), pybids>=0.7 for querying dataset, and
`TemplateFlow <https://github.com/templateflow>`__ for handling standard spaces.

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2 changes: 1 addition & 1 deletion docs/conf.py
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Expand Up @@ -344,7 +344,7 @@
"nipype": ("https://nipype.readthedocs.io/en/latest/", None),
"niworkflows": ("https://www.nipreps.org/niworkflows/", None),
"sdcflows": ("https://www.nipreps.org/sdcflows/", None),
"smriprep": ("https://poldracklab.github.io/smriprep/", None),
"smriprep": ("https://www.nipreps.org/smriprep/", None),
"templateflow": ("https://www.templateflow.org/python-client", None),
}

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2 changes: 1 addition & 1 deletion docs/faq.rst
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Expand Up @@ -29,7 +29,7 @@ What if I find some images have undergone some pre-processing already (e.g., my
These images imply an unknown level of preprocessing (e.g. was it already bias-field corrected?),
which makes it difficult to decide on best-practices for further processing.
Hence, supporting such images was considered very low priority for *fMRIPrep*.
For example, see `#707 <https://github.com/poldracklab/smriprep/issues/12>`_ and an illustration of
For example, see `#707 <https://github.com/nipreps/smriprep/issues/12>`_ and an illustration of
downstream consequences in `#939 <https://github.com/poldracklab/fmriprep/issues/939>`_.

So for OpenFMRI, we've been excluding these subjects, and for user-supplied data, we would recommend
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2 changes: 1 addition & 1 deletion setup.cfg
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Expand Up @@ -35,7 +35,7 @@ install_requires =
pyyaml
requests
sdcflows ~= 1.3.1
smriprep @ git+https://github.com/poldracklab/smriprep.git@master
smriprep @ git+https://github.com/nipreps/smriprep.git@master
tedana >= 0.0.9a1, < 0.0.10
templateflow ~= 0.6
toml
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