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Pull requests: nf-core/modules

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Pull requests list

9396 new subworkflow fastq decontaminate deacon hostile
#9441 opened Nov 23, 2025 by Baksic-Ivan Loading…
17 tasks
1
Add mmseqs createtaxdb Ready for Review
#9440 opened Nov 22, 2025 by dialvarezs Loading…
2 of 17 tasks
Update module sequali to version 1.0.2
#9439 opened Nov 22, 2025 by bagnacan Loading…
4 of 17 tasks
Add stitch imputation subworkflow new subworkflow
#9438 opened Nov 21, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
Update output paths in bases2fastq module
#9436 opened Nov 21, 2025 by lucacozzuto Loading…
6 of 16 tasks
Refactor GAWK implicit closures
#9435 opened Nov 21, 2025 by DLBPointon Loading…
Update glimpse2 imputation subworkflow Ready for Review subworkflows update module update subworkflow
#9434 opened Nov 20, 2025 by LouisLeNezet Loading…
17 tasks
@LouisLeNezet
New module: whatshap/phase
#9431 opened Nov 19, 2025 by HaidYi Loading…
12 of 17 tasks
1
@HaidYi
lint: fix linting warnings in GAWK module
#9420 opened Nov 18, 2025 by prototaxites Loading…
17 tasks
1
switch to prek to handle pre-commit rules
#9406 opened Nov 14, 2025 by mashehu Loading…
2
Updare fgbio/copyumifromreadname
#9373 opened Nov 10, 2025 by SPPearce • Draft
Add module: TRIDENT_FETCH
#9360 opened Nov 7, 2025 by TCLamnidis Loading…
4 of 20 tasks
5
Vcf vembrane
#9345 opened Nov 5, 2025 by dhtt • Draft
12 of 17 tasks
@dhtt
1
Vembrane filter
#9340 opened Nov 5, 2025 by dhtt Loading…
12 of 17 tasks
@mkatsanto @dhtt @trangdo-hsc
13
Use tar --no-same-owner option for untar module
#9338 opened Nov 4, 2025 by nathanweeks Loading…
2 of 17 tasks
6
Merge modules with new topics syntax
#9333 opened Nov 3, 2025 by mashehu Loading…
2
Add fq2bam fq align dd bwamem
#9309 opened Oct 30, 2025 by eduard-watchmaker Loading…
17 tasks
54
Restructuring how symlinks work to avoid conflicts with file permissions
#9308 opened Oct 30, 2025 by gburnett-nvidia Loading…
8 of 17 tasks
1
fix: gprofiler2 output files missing gene names in intersection columns #497 good first issue Good for newcomers
#9304 opened Oct 29, 2025 by mohe1linux Loading…
@mohe1linux
Prior cons buildpriors [DRAFT]
#9300 opened Oct 29, 2025 by zhliUU Loading…
1 of 3 tasks
2
Add priorcons module [DRAFT]
#9299 opened Oct 29, 2025 by GERMAN00VP Loading…
12 of 17 tasks
3
feat: addition of vembrane sort module
#9294 opened Oct 29, 2025 by mkatsanto Loading…
12 of 13 tasks
1
@mkatsanto @trangdo-hsc
18
Add nf-co2footprint plugin for emissions tracking
#9293 opened Oct 29, 2025 by edmundmiller Loading…
4 tasks
1
@edmundmiller
5
trim_galore version
#9276 opened Oct 28, 2025 by yadavbha Loading…
17 tasks
4
update module: vcf2zarr/convert
#9270 opened Oct 28, 2025 by camlloyd Loading…
2 of 17 tasks
1
2
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