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See https://groups.google.com/forum/#!topic/mathjax-users/uzeG77ffPr0 for details.
The following example in IE7 (quirks mode) has the bottom of the brackets cut off when the default font is Times New Roman.
<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
<meta HTTP-EQUIV="Content-Type" CONTENT="text/html; charset=utf-8">
<script type="text/x-mathjax-config">
MathJax.Hub.Config({
config: ["MML_HTMLorMML.js"],
jax: ["input/MathML","output/HTML-CSS", "output/NativeMML"],
extensions: ["mml2jax.js","MathMenu.js","MathZoom.js"],
menuSettings: {zoom:"Click"}
});
</script>
<script type="text/javascript" src="MathJax-2.0/MathJax.js"></script>
</head>
<body>
<div>
<math display="block">
<mo>[</mo>
<mfrac>
<mi>x</mi>
<mi>y</mi>
</mfrac>
<mo>]</mo>
</math>
</div>
</body>
</html>