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Updated Powerfit-webserver tutorial #747

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1965f9c
updated link to powerfit webservice
AnnaEngel98 Oct 7, 2025
bd9d373
changed link from chimera to chimeraX
AnnaEngel98 Oct 7, 2025
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6 changes: 3 additions & 3 deletions education/Others/powerfit-webserver/index.md
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Expand Up @@ -24,7 +24,7 @@ local resources on our cluster, using the multi-core version of the software, or
[EGI](https://www.egi.eu){:target="_blank"} to speed up the calculations. It only requires a web browser to work and benefits from the latest
developments in the software based on a stable and tested workflow. Next to providing an automated workflow around
PowerFit, the web server also summarizes and higlights the results in a single page including some additional postprocessing
of the PowerFit output using [UCSF Chimera][link-chimera]{:target="_blank"}.
of the PowerFit output using [UCSF ChimeraX][link-chimerax]{:target="_blank"}.
Chimera is a visualization software and popular tool in the cryo-EM community for its volume visualization capabilities.

The case we will be investigating is a complex between the 30S maturing *E. coli*
Expand Down Expand Up @@ -414,11 +414,11 @@ for computational biomolecular research.


[link-powerfit]: https://github.com/haddocking/powerfit "PowerFit"
[link-powerfit-web]: https://alcazar.science.uu.nl/services/POWERFIT/ "PowerFit web server"
[link-powerfit-web]: https://rascar.science.uu.nl/powerfit "PowerFit web server"
[link-powerfit-register]: https://wenmr.science.uu.nl/auth/register/powerfit"PowerFit registration"
[link-powerfit-submit]: https://alcazar.science.uu.nl/cgi/services/POWERFIT/powerfit/submit "PowerFit submission"
[link-powerfit-help]: https://alcazar.science.uu.nl/cgi/services/POWERFIT/powerfit/help "PowerFit submission"
[link-chimera]: https://www.cgl.ucsf.edu/chimera/ "UCSF Chimera"
[link-chimerax]: https://www.cgl.ucsf.edu/chimerax/ "UCSF ChimeraX"
[link-data]: https://alcazar.science.uu.nl/cgi/services/POWERFIT/powerfit/powerfit-tutorial.tgz "PowerFit tutorial data"
[link-density]: https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-1884 "Ribosome RsgA density"
[link-pdb]: https://www.rcsb.org/pdb/explore/explore.do?structureId=2YKR "PDBid 2YKR"
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