🧬 How do you turn processing Next Generation Sequencing (NGS) / Omics data, also called as Upstream analysis, into a stress-free and organized experience instead of chaos?

💡 A Workflow Manager or Workflow Management System (WfMS) lets you run multiple bioinformatics tools in a well-organized pipeline, making every step reproducible, documented and easy to debug for real peace of mind.

🎯 My Go-To Workflow Manager is #Nextflow from #nf-core and here are some great resources to get started:

1. 📚 Reading:

   1. What is a workflow manager: https://oh-sfs-handbook.readthedocs.io/en/latest/Compute/workflows.html
   2. Why Nextflow: https://www.nextflow.io/docs/latest/overview.html
   3. Nextflow enables reproducible computational workflows: https://pubmed.ncbi.nlm.nih.gov/28398311/
   4. Empowering bioinformatics communities with Nextflow and nf-core: https://pubmed.ncbi.nlm.nih.gov/40731283/

2. 🛠️ Hands-on:

   1. Getting Started with Nextflow: https://carpentries-incubator.github.io/workflows-nextflow/01-getting-started-with-nextflow.html
   2. How to run a Nextflow-based #Pipeline: https://nf-co.re/docs/usage/getting_started/introduction
   3. List of Pipelines:
      • https://nf-co.re/pipelines/
      • https://github.com/nextflow-io/awesome-nextflow
   4. YouTube channel: https://www.youtube.com/channel/UCB-5LCKLdTKVn2F4V4KlPbQ
   5. ☁️ Cloud: https://docs.seqera.io/platform-cloud/ with Seqera