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Pull requests: galaxyproject/tools-iuc

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Pull requests list

Updating tools/diamond from version 2.1.13 to 2.1.15
#7429 opened Nov 3, 2025 by gxydevbot Loading…
Updating tools/binette from version 1.1.2 to 1.2.0
#7428 opened Nov 3, 2025 by gxydevbot Loading…
Updating tools/biapy from version 3.6.5 to 3.6.6
#7427 opened Nov 3, 2025 by gxydevbot Loading…
Fix faidx bgzf fastq
#7426 opened Nov 1, 2025 by Syrinx55 Loading…
3 of 5 tasks
5
Add fastreer
#7425 opened Nov 1, 2025 by gkanogiannis Loading…
3 of 5 tasks
35
Add fastq-groupmerge
#7424 opened Oct 31, 2025 by SantaMcCloud Loading…
3 of 5 tasks
2
MetaPhlAn - Update to 4.2.4
#7423 opened Oct 31, 2025 by RZ9082 • Draft
5 tasks
Add kMetaShot and DM for kMetaShot
#7421 opened Oct 30, 2025 by SantaMcCloud Loading…
3 of 5 tasks
14
Fastq-dl - Capture exit code in for loop
#7420 opened Oct 30, 2025 by RZ9082 Loading…
3 of 5 tasks
Fix detection of tables in pandas
#7419 opened Oct 30, 2025 by bgruening Loading…
Update ampvis2
#7418 opened Oct 30, 2025 by bernt-matthias Loading…
3 of 5 tasks
Tesseract - Fix default language to english
#7416 opened Oct 30, 2025 by RZ9082 Loading…
3 of 5 tasks
Add CellTypist tool for automated celltype annotation
#7415 opened Oct 30, 2025 by pavanvidem • Draft
3 of 5 tasks
6
Add Samtools Consensus
#7407 opened Oct 29, 2025 by Smkingsize Loading…
3 tasks done
11
Fix IEDB API URL and Test Allele Input
#7405 opened Oct 28, 2025 by reid-wagner Loading…
3 of 5 tasks
data_manager support for ncbi-amrfinderplus 4.0.x databases
#7404 opened Oct 28, 2025 by PovilasMat Loading…
3 of 5 tasks
2
salmon DM: really allow multiple transcriptomes
#7402 opened Oct 28, 2025 by bernt-matthias Loading…
3 of 5 tasks
Updating tools/mirmachine from version 0.3.0.1 to 0.3.0.2
#7394 opened Oct 27, 2025 by gxydevbot Loading…
minimap2 update to 2.30
#7388 opened Oct 25, 2025 by bgruening Loading…
3 of 5 tasks
3
New tool addition: Beast2 wrappers
#7387 opened Oct 24, 2025 by SaimMomin12 • Draft
3 of 5 tasks
2
fgbio findswitchbackreads
#7383 opened Oct 23, 2025 by bwlang Loading…
3 of 5 tasks
22
[WIP] add alpha version of pangenie
#7380 opened Oct 23, 2025 by bgruening • Draft
Updating tools/bigscape from version 1.1.9 to 2.0.0
#7372 opened Oct 20, 2025 by gxydevbot Loading…
1
[WIP] odgi update + new tools
#7371 opened Oct 19, 2025 by bgruening • Draft
added otak_tool
#7367 opened Oct 18, 2025 by Deeptivarshney Loading…
2 of 4 tasks
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