can mount volumes from host for MySQL data on Windows Docker

[AleshchenkoMaksim]

i have same problem. Percona(or mariadb or mysql) can not start.

Docker stats:
docker -v
Docker version 17.03.0-ce, build 60ccb22
docker-compose -v
docker-compose version 1.11.2, build f963d76f
docker-machine -v
docker-machine.exe version 0.10.0, build 76ed2a6

Windows 10.

docker-compose.yml

_version: '2'
services:
  db:
    image: percona:latest
    volumes:
      - ./data/db:/var/lib/mysql
    restart: always
    container_name: mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234
      MYSQL_DATABASE: db
      MYSQL_USER: db_user
      MYSQL_PASSWORD: 1234_

Docker log:

Initializing database
2017-03-22T21:00:02.880303Z 0 [Warning] 'NO_ZERO_DATE', 'NO_ZERO_IN_DATE' and 'ERROR_FOR_DIVISION_BY_ZERO' sql modes should be used with strict mode. They will be merged with strict mode in a future release.
2017-03-22T21:00:02.880349Z 0 [Warning] 'NO_AUTO_CREATE_USER' sql mode was not set.
2017-03-22T21:00:05.468269Z 0 [Warning] InnoDB: Retry attempts for writing partial data failed.
2017-03-22T21:00:05.468309Z 0 [ERROR] InnoDB: Write to file /var/lib/mysql/xb_doublewritefailed at offset 0, 1048576 bytes should have been written, only 0 were written. Operating system error number 22. Check that your OS and file system support files of this size. Check also that the disk is not full or a disk quota exceeded.
2017-03-22T21:00:05.468321Z 0 [ERROR] InnoDB: Error number 22 means 'Invalid argument'
2017-03-22T21:00:05.469852Z 0 [ERROR] InnoDB: InnoDB Database creation was aborted with error Generic error. You may need to delete the ibdata1 file before trying to start up again.
2017-03-22T21:00:06.070990Z 0 [ERROR] Plugin 'InnoDB' init function returned error.
2017-03-22T21:00:06.071021Z 0 [ERROR] Plugin 'InnoDB' registration as a STORAGE ENGINE failed.
2017-03-22T21:00:06.071025Z 0 [ERROR] Failed to initialize plugins.
2017-03-22T21:00:06.071028Z 0 [ERROR] Aborting

It's not permissions problems because some files was created. look this screen: http://joxi.ru/n2Y05v5CxGLLm6

I think that some problems with write db files to host machine.
There are ideas for solving the problem.

[learningnewthings]

TL;DR this can be fixed here (bitnami doesn't have this issue)

This is an old BUG with both Percona and MariaDB Dockerfiles. ( there are many bug reports, but in the wrong places, i.e. : MariaDB/mariadb-docker#38 )

Truthfully, this may be a Windows Docker bug, BUT this can be fixed from this Dockerfile, as both bitnami/mariadb and webhippie/mariadb Dockerfiles do NOT have this bug.

Until it get's fixed, for Windows Docker, you can use bitnami/mariadb or webhippie/mariadb Dokerfiles.

[yosifkit]

I am unable to reproduce; it runs fine with a mounted folder and I can even connect to the container from another container. I am on a slightly newer version of docker also using docker-toolbox on Windows 10.

$ docker version
Client:
 Version:      17.04.0-ce
 API version:  1.28
 Go version:   go1.7.5
 Git commit:   4845c56
 Built:        Wed Apr  5 23:33:17 2017
 OS/Arch:      windows/amd64

Server:
 Version:      17.04.0-ce
 API version:  1.28 (minimum version 1.12)
 Go version:   go1.7.5
 Git commit:   4845c56
 Built:        Wed Apr  5 18:45:47 2017
 OS/Arch:      linux/amd64
 Experimental: false

Percona logs:

sauron@Osgiliath MINGW64 ~/dicker
$ docker-compose up
Creating mysql
Attaching to mysql
mysql | Initializing database
mysql | 2017-04-25T21:42:01.355538Z 0 [Warning] 'NO_ZERO_DATE', 'NO_ZERO_IN_DATE' and 'ERROR_FOR_DIVISION_BY_ZERO' sql modes should be used with strict mode. They will be merged with strict mode in a future release.
mysql | 2017-04-25T21:42:01.355576Z 0 [Warning] 'NO_AUTO_CREATE_USER' sql mode was not set.
mysql | 2017-04-25T21:42:01.360806Z 0 [Warning] Setting lower_case_table_names=2 because file system for /var/lib/mysql/ is case insensitive
mysql | 2017-04-25T21:42:01.766566Z 0 [Warning] InnoDB: Failed to set O_DIRECT on file/var/lib/mysql/xb_doublewrite;create: Invalid argument, continuing anyway. O_DIRECT is known to result in 'Invalid argument' on Linux on tmpfs, see MySQL Bug#26662.
mysql | 2017-04-25T21:42:01.804560Z 0 [Warning] InnoDB: New log files created, LSN=45790
mysql | 2017-04-25T21:42:02.275272Z 0 [Warning] InnoDB: Creating foreign key constraint system tables.
mysql | 2017-04-25T21:42:02.335841Z 0 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: 04956ebc-2a00-11e7-a942-0242ac120002.
mysql | 2017-04-25T21:42:02.349077Z 0 [Warning] Gtid table is not ready to be used. Table 'mysql.gtid_executed' cannot be opened.
mysql | 2017-04-25T21:42:02.613607Z 0 [Warning] CA certificate ca.pem is self signed.
mysql | 2017-04-25T21:42:02.656332Z 1 [Warning] root@localhost is created with an empty password ! Please consider switching off the --initialize-insecure option.
mysql | 2017-04-25T21:42:06.864916Z 1 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:06.865012Z 1 [Warning] 'user' entry 'mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:06.865102Z 1 [Warning] 'db' entry 'sys mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:06.865166Z 1 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:06.865264Z 1 [Warning] 'tables_priv' entry 'sys_config mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | Database initialized
mysql | MySQL init process in progress...
mysql | 2017-04-25T21:42:10.448664Z 0 [Warning] 'NO_ZERO_DATE', 'NO_ZERO_IN_DATE' and 'ERROR_FOR_DIVISION_BY_ZERO' sql modes should be used with strict mode. They will be merged with strict mode in a future release.
mysql | 2017-04-25T21:42:10.448703Z 0 [Warning] 'NO_AUTO_CREATE_USER' sql mode was not set.
mysql | 2017-04-25T21:42:10.452147Z 0 [Note] mysqld (mysqld 5.7.17-13) starting as process 54 ...
mysql | 2017-04-25T21:42:10.455650Z 0 [Warning] Setting lower_case_table_names=2 because file system for /var/lib/mysql/ is case insensitive
mysql | 2017-04-25T21:42:10.457287Z 0 [Note] InnoDB: PUNCH HOLE support available
mysql | 2017-04-25T21:42:10.457484Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
mysql | 2017-04-25T21:42:10.457506Z 0 [Note] InnoDB: Uses event mutexes
mysql | 2017-04-25T21:42:10.457518Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
mysql | 2017-04-25T21:42:10.457602Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.8
mysql | 2017-04-25T21:42:10.457614Z 0 [Note] InnoDB: Using Linux native AIO
mysql | 2017-04-25T21:42:10.457768Z 0 [Note] InnoDB: Number of pools: 1
mysql | 2017-04-25T21:42:10.457836Z 0 [Note] InnoDB: Using CPU crc32 instructions
mysql | 2017-04-25T21:42:10.458712Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
mysql | 2017-04-25T21:42:10.460999Z 0 [Note] InnoDB: Completed initialization of buffer pool
mysql | 2017-04-25T21:42:10.462330Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
mysql | 2017-04-25T21:42:10.483234Z 0 [Note] InnoDB: Crash recovery did not find the parallel doublewrite buffer at /var/lib/mysql/xb_doublewrite
mysql | 2017-04-25T21:42:10.489370Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
mysql | 2017-04-25T21:42:10.499502Z 0 [Warning] InnoDB: Failed to set O_DIRECT on file/var/lib/mysql/xb_doublewrite;create: Invalid argument, continuing anyway. O_DIRECT is known to result in 'Invalid argument' on Linux on tmpfs, see MySQL Bug#26662.
mysql | 2017-04-25T21:42:10.516846Z 0 [Note] InnoDB: Created parallel doublewrite buffer at /var/lib/mysql/xb_doublewrite, size 3932160 bytes
mysql | 2017-04-25T21:42:10.543221Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
mysql | 2017-04-25T21:42:10.544050Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
mysql | 2017-04-25T21:42:10.588437Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
mysql | 2017-04-25T21:42:10.592841Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
mysql | 2017-04-25T21:42:10.592924Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
mysql | 2017-04-25T21:42:10.593226Z 0 [Note] InnoDB: Waiting for purge to start
mysql | 2017-04-25T21:42:10.644124Z 0 [Note] InnoDB: Percona XtraDB (http://www.percona.com) 5.7.17-13 started; log sequence number 2497683
mysql | 2017-04-25T21:42:10.646642Z 0 [Note] Plugin 'FEDERATED' is disabled.
mysql | 2017-04-25T21:42:10.651025Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
mysql | 2017-04-25T21:42:10.676861Z 0 [Warning] World-writable config file './auto.cnf' is ignored.
mysql | 2017-04-25T21:42:10.678811Z 0 [Warning] World-writable config file './auto.cnf' has been removed.
mysql |
mysql | 2017-04-25T21:42:10.679946Z 0 [Note] Salting uuid generator variables, current_pid: 54, server_start_time: 1493156530, bytes_sent: 0,
mysql | 2017-04-25T21:42:10.681396Z 0 [Note] Generated uuid: '098edd91-2a00-11e7-82a0-0242ac120002', server_start_time: 15199650235532008, bytes_sent: 59999984
mysql | 2017-04-25T21:42:10.682442Z 0 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: 098edd91-2a00-11e7-82a0-0242ac120002.
mysql | 2017-04-25T21:42:10.705437Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.
mysql | 2017-04-25T21:42:10.705546Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.
mysql | 2017-04-25T21:42:10.706867Z 0 [Note] InnoDB: Buffer pool(s) load completed at 170425 21:42:10
mysql | 2017-04-25T21:42:10.709303Z 0 [Warning] CA certificate ca.pem is self signed.
mysql | 2017-04-25T21:42:10.710156Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.
mysql | 2017-04-25T21:42:10.731618Z 0 [Warning] 'user' entry 'root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:10.731695Z 0 [Warning] 'user' entry 'mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:10.731782Z 0 [Warning] 'db' entry 'sys mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:10.731838Z 0 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:10.759185Z 0 [Warning] 'tables_priv' entry 'sys_config mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:10.855831Z 0 [Note] Event Scheduler: Loaded 0 events
mysql | 2017-04-25T21:42:10.855980Z 0 [Note] Executing 'SELECT * FROM INFORMATION_SCHEMA.TABLES;' to get a list of tables using the deprecated partition engine. You may use the startup option '--disable-partition-engine-check' to skip this check.
mysql | 2017-04-25T21:42:10.855997Z 0 [Note] Beginning of list of non-natively partitioned tables
mysql | 2017-04-25T21:42:11.004996Z 0 [Note] End of list of non-natively partitioned tables
mysql | 2017-04-25T21:42:11.005122Z 0 [Note] mysqld: ready for connections.
mysql | Version: '5.7.17-13'  socket: '/var/run/mysqld/mysqld.sock'  port: 0  Percona Server (GPL), Release '13', Revision 'fd33d43'
mysql | Warning: Unable to load '/usr/share/zoneinfo/iso3166.tab' as time zone. Skipping it.
mysql | Warning: Unable to load '/usr/share/zoneinfo/leap-seconds.list' as time zone. Skipping it.
mysql | Warning: Unable to load '/usr/share/zoneinfo/zone.tab' as time zone. Skipping it.
mysql | 2017-04-25T21:42:13.833353Z 5 [Warning] 'db' entry 'sys mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:13.833706Z 5 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:13.833875Z 5 [Warning] 'tables_priv' entry 'sys_config mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | mysql: [Warning] Using a password on the command line interface can be insecure.
mysql | mysql: [Warning] Using a password on the command line interface can be insecure.
mysql | mysql: [Warning] Using a password on the command line interface can be insecure.
mysql | mysql: [Warning] Using a password on the command line interface can be insecure.
mysql | 2017-04-25T21:42:13.913781Z 9 [Warning] 'db' entry 'sys mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:13.914124Z 9 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:13.922375Z 9 [Warning] 'tables_priv' entry 'sys_config mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql |
mysql | 2017-04-25T21:42:13.925122Z 0 [Note] Giving 1 client threads a chance to die gracefully
mysql | 2017-04-25T21:42:13.925178Z 0 [Note] Shutting down slave threads
mysql | 2017-04-25T21:42:15.925617Z 0 [Note] Forcefully disconnecting 0 remaining clients
mysql | 2017-04-25T21:42:15.925698Z 0 [Note] Event Scheduler: Purging the queue. 0 events
mysql | 2017-04-25T21:42:15.925753Z 0 [Note] Binlog end
mysql | 2017-04-25T21:42:15.936283Z 0 [Note] Shutting down plugin 'ngram'
mysql | 2017-04-25T21:42:15.936404Z 0 [Note] Shutting down plugin 'partition'
mysql | 2017-04-25T21:42:15.936421Z 0 [Note] Shutting down plugin 'ARCHIVE'
mysql | 2017-04-25T21:42:15.936432Z 0 [Note] Shutting down plugin 'BLACKHOLE'
mysql | 2017-04-25T21:42:15.936443Z 0 [Note] Shutting down plugin 'CSV'
mysql | 2017-04-25T21:42:15.936453Z 0 [Note] Shutting down plugin 'INNODB_SYS_VIRTUAL'
mysql | 2017-04-25T21:42:15.936462Z 0 [Note] Shutting down plugin 'INNODB_CHANGED_PAGES'
mysql | 2017-04-25T21:42:15.936471Z 0 [Note] Shutting down plugin 'INNODB_SYS_DATAFILES'
mysql | 2017-04-25T21:42:15.936480Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESPACES'
mysql | 2017-04-25T21:42:15.936488Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN_COLS'
mysql | 2017-04-25T21:42:15.936498Z 0 [Note] Shutting down plugin 'INNODB_SYS_FOREIGN'
mysql | 2017-04-25T21:42:15.936508Z 0 [Note] Shutting down plugin 'INNODB_SYS_FIELDS'
mysql | 2017-04-25T21:42:15.936517Z 0 [Note] Shutting down plugin 'INNODB_SYS_COLUMNS'
mysql | 2017-04-25T21:42:15.936528Z 0 [Note] Shutting down plugin 'INNODB_SYS_INDEXES'
mysql | 2017-04-25T21:42:15.936579Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLESTATS'
mysql | 2017-04-25T21:42:15.936592Z 0 [Note] Shutting down plugin 'INNODB_SYS_TABLES'
mysql | 2017-04-25T21:42:15.936602Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_TABLE'
mysql | 2017-04-25T21:42:15.936610Z 0 [Note] Shutting down plugin 'INNODB_FT_INDEX_CACHE'
mysql | 2017-04-25T21:42:15.936619Z 0 [Note] Shutting down plugin 'INNODB_FT_CONFIG'
mysql | 2017-04-25T21:42:15.936628Z 0 [Note] Shutting down plugin 'INNODB_FT_BEING_DELETED'
mysql | 2017-04-25T21:42:15.936638Z 0 [Note] Shutting down plugin 'INNODB_FT_DELETED'
mysql | 2017-04-25T21:42:15.936647Z 0 [Note] Shutting down plugin 'INNODB_FT_DEFAULT_STOPWORD'
mysql | 2017-04-25T21:42:15.936658Z 0 [Note] Shutting down plugin 'INNODB_METRICS'
mysql | 2017-04-25T21:42:15.936669Z 0 [Note] Shutting down plugin 'INNODB_TEMP_TABLE_INFO'
mysql | 2017-04-25T21:42:15.936678Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_POOL_STATS'
mysql | 2017-04-25T21:42:15.936687Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE_LRU'
mysql | 2017-04-25T21:42:15.936697Z 0 [Note] Shutting down plugin 'INNODB_BUFFER_PAGE'
mysql | 2017-04-25T21:42:15.936706Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX_RESET'
mysql | 2017-04-25T21:42:15.936715Z 0 [Note] Shutting down plugin 'INNODB_CMP_PER_INDEX'
mysql | 2017-04-25T21:42:15.936723Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM_RESET'
mysql | 2017-04-25T21:42:15.936732Z 0 [Note] Shutting down plugin 'INNODB_CMPMEM'
mysql | 2017-04-25T21:42:15.936741Z 0 [Note] Shutting down plugin 'INNODB_CMP_RESET'
mysql | 2017-04-25T21:42:15.936749Z 0 [Note] Shutting down plugin 'INNODB_CMP'
mysql | 2017-04-25T21:42:15.936758Z 0 [Note] Shutting down plugin 'INNODB_LOCK_WAITS'
mysql | 2017-04-25T21:42:15.936767Z 0 [Note] Shutting down plugin 'INNODB_LOCKS'
mysql | 2017-04-25T21:42:15.936775Z 0 [Note] Shutting down plugin 'INNODB_TRX'
mysql | 2017-04-25T21:42:15.936784Z 0 [Note] Shutting down plugin 'XTRADB_ZIP_DICT_COLS'
mysql | 2017-04-25T21:42:15.936793Z 0 [Note] Shutting down plugin 'XTRADB_ZIP_DICT'
mysql | 2017-04-25T21:42:15.936802Z 0 [Note] Shutting down plugin 'XTRADB_RSEG'
mysql | 2017-04-25T21:42:15.936811Z 0 [Note] Shutting down plugin 'XTRADB_INTERNAL_HASH_TABLES'
mysql | 2017-04-25T21:42:15.936819Z 0 [Note] Shutting down plugin 'XTRADB_READ_VIEW'
mysql | 2017-04-25T21:42:15.936827Z 0 [Note] Shutting down plugin 'InnoDB'
mysql | 2017-04-25T21:42:15.937140Z 0 [Note] InnoDB: FTS optimize thread exiting.
mysql | 2017-04-25T21:42:15.937280Z 0 [Note] InnoDB: Starting shutdown...
mysql | 2017-04-25T21:42:16.040110Z 0 [Note] InnoDB: Dumping buffer pool(s) to /var/lib/mysql/ib_buffer_pool
mysql | 2017-04-25T21:42:16.051629Z 0 [Note] InnoDB: Buffer pool(s) dump completed at 170425 21:42:16
mysql | 2017-04-25T21:42:16.843824Z 0 [Note] InnoDB: Waiting for page_cleaner to finish flushing of buffer pool
mysql | 2017-04-25T21:42:18.229901Z 0 [Note] InnoDB: Shutdown completed; log sequence number 12103830
mysql | 2017-04-25T21:42:18.236984Z 0 [Note] InnoDB: Removed temporary tablespace data file: "ibtmp1"
mysql | 2017-04-25T21:42:18.237226Z 0 [Note] Shutting down plugin 'MRG_MYISAM'
mysql | 2017-04-25T21:42:18.237280Z 0 [Note] Shutting down plugin 'MEMORY'
mysql | 2017-04-25T21:42:18.237483Z 0 [Note] Shutting down plugin 'PERFORMANCE_SCHEMA'
mysql | 2017-04-25T21:42:18.237721Z 0 [Note] Shutting down plugin 'MyISAM'
mysql | 2017-04-25T21:42:18.237794Z 0 [Note] Shutting down plugin 'sha256_password'
mysql | 2017-04-25T21:42:18.237984Z 0 [Note] Shutting down plugin 'mysql_native_password'
mysql | 2017-04-25T21:42:18.238635Z 0 [Note] Shutting down plugin 'binlog'
mysql | 2017-04-25T21:42:18.242957Z 0 [Note] mysqld: Shutdown complete
mysql |
mysql |
mysql | MySQL init process done. Ready for start up.
mysql |
mysql | 2017-04-25T21:42:18.458709Z 0 [Warning] 'NO_ZERO_DATE', 'NO_ZERO_IN_DATE' and 'ERROR_FOR_DIVISION_BY_ZERO' sql modes should be used with strict mode. They will be merged with strict mode in a future release.
mysql | 2017-04-25T21:42:18.458752Z 0 [Warning] 'NO_AUTO_CREATE_USER' sql mode was not set.
mysql | 2017-04-25T21:42:18.461894Z 0 [Note] mysqld (mysqld 5.7.17-13) starting as process 1 ...
mysql | 2017-04-25T21:42:18.465219Z 0 [Warning] Setting lower_case_table_names=2 because file system for /var/lib/mysql/ is case insensitive
mysql | 2017-04-25T21:42:18.467163Z 0 [Note] InnoDB: PUNCH HOLE support available
mysql | 2017-04-25T21:42:18.467210Z 0 [Note] InnoDB: Mutexes and rw_locks use GCC atomic builtins
mysql | 2017-04-25T21:42:18.467219Z 0 [Note] InnoDB: Uses event mutexes
mysql | 2017-04-25T21:42:18.467228Z 0 [Note] InnoDB: GCC builtin __atomic_thread_fence() is used for memory barrier
mysql | 2017-04-25T21:42:18.467235Z 0 [Note] InnoDB: Compressed tables use zlib 1.2.8
mysql | 2017-04-25T21:42:18.467242Z 0 [Note] InnoDB: Using Linux native AIO
mysql | 2017-04-25T21:42:18.467433Z 0 [Note] InnoDB: Number of pools: 1
mysql | 2017-04-25T21:42:18.467501Z 0 [Note] InnoDB: Using CPU crc32 instructions
mysql | 2017-04-25T21:42:18.468710Z 0 [Note] InnoDB: Initializing buffer pool, total size = 128M, instances = 1, chunk size = 128M
mysql | 2017-04-25T21:42:18.470965Z 0 [Note] InnoDB: Completed initialization of buffer pool
mysql | 2017-04-25T21:42:18.472597Z 0 [Note] InnoDB: If the mysqld execution user is authorized, page cleaner thread priority can be changed. See the man page of setpriority().
mysql | 2017-04-25T21:42:18.492430Z 0 [Note] InnoDB: Crash recovery did not find the parallel doublewrite buffer at /var/lib/mysql/xb_doublewrite
mysql | 2017-04-25T21:42:18.496968Z 0 [Note] InnoDB: Highest supported file format is Barracuda.
mysql | 2017-04-25T21:42:18.505850Z 0 [Warning] InnoDB: Failed to set O_DIRECT on file/var/lib/mysql/xb_doublewrite;create: Invalid argument, continuing anyway. O_DIRECT is known to result in 'Invalid argument' on Linux on tmpfs, see MySQL Bug#26662.
mysql | 2017-04-25T21:42:18.523991Z 0 [Note] InnoDB: Created parallel doublewrite buffer at /var/lib/mysql/xb_doublewrite, size 3932160 bytes
mysql | 2017-04-25T21:42:18.554120Z 0 [Note] InnoDB: Creating shared tablespace for temporary tables
mysql | 2017-04-25T21:42:18.555783Z 0 [Note] InnoDB: Setting file './ibtmp1' size to 12 MB. Physically writing the file full; Please wait ...
mysql | 2017-04-25T21:42:18.598681Z 0 [Note] InnoDB: File './ibtmp1' size is now 12 MB.
mysql | 2017-04-25T21:42:18.603714Z 0 [Note] InnoDB: 96 redo rollback segment(s) found. 96 redo rollback segment(s) are active.
mysql | 2017-04-25T21:42:18.603794Z 0 [Note] InnoDB: 32 non-redo rollback segment(s) are active.
mysql | 2017-04-25T21:42:18.603993Z 0 [Note] InnoDB: Waiting for purge to start
mysql | 2017-04-25T21:42:18.654389Z 0 [Note] InnoDB: Percona XtraDB (http://www.percona.com) 5.7.17-13 started; log sequence number 12103830
mysql | 2017-04-25T21:42:18.655348Z 0 [Note] Plugin 'FEDERATED' is disabled.
mysql | 2017-04-25T21:42:18.656755Z 0 [Note] InnoDB: Loading buffer pool(s) from /var/lib/mysql/ib_buffer_pool
mysql | 2017-04-25T21:42:18.664977Z 0 [Warning] World-writable config file './auto.cnf' is ignored.
mysql | 2017-04-25T21:42:18.666761Z 0 [Warning] World-writable config file './auto.cnf' has been removed.
mysql |
mysql | 2017-04-25T21:42:18.668436Z 0 [Note] Salting uuid generator variables, current_pid: 1, server_start_time: 1493156538, bytes_sent: 0,
mysql | 2017-04-25T21:42:18.669257Z 0 [Note] Generated uuid: '0e51b799-2a00-11e7-80d3-0242ac120002', server_start_time: 281476469867195, bytes_sent: 59799280
mysql | 2017-04-25T21:42:18.669344Z 0 [Warning] No existing UUID has been found, so we assume that this is the first time that this server has been started. Generating a new UUID: 0e51b799-2a00-11e7-80d3-0242ac120002.
mysql | 2017-04-25T21:42:18.692530Z 0 [Note] Found ca.pem, server-cert.pem and server-key.pem in data directory. Trying to enable SSL support using them.
mysql | 2017-04-25T21:42:18.693080Z 0 [Note] Skipping generation of SSL certificates as certificate files are present in data directory.
mysql | 2017-04-25T21:42:18.697286Z 0 [Warning] CA certificate ca.pem is self signed.
mysql | 2017-04-25T21:42:18.698309Z 0 [Note] Skipping generation of RSA key pair as key files are present in data directory.
mysql | 2017-04-25T21:42:18.704217Z 0 [Note] Server hostname (bind-address): '*'; port: 3306
mysql | 2017-04-25T21:42:18.712301Z 0 [Note] IPv6 is available.
mysql | 2017-04-25T21:42:18.712313Z 0 [Note]   - '::' resolves to '::';
mysql | 2017-04-25T21:42:18.712327Z 0 [Note] Server socket created on IP: '::'.
mysql | 2017-04-25T21:42:18.731432Z 0 [Note] InnoDB: Buffer pool(s) load completed at 170425 21:42:18
mysql | 2017-04-25T21:42:18.736558Z 0 [Warning] 'db' entry 'sys mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:18.736995Z 0 [Warning] 'proxies_priv' entry '@ root@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:18.759067Z 0 [Warning] 'tables_priv' entry 'sys_config mysql.sys@localhost' ignored in --skip-name-resolve mode.
mysql | 2017-04-25T21:42:18.847231Z 0 [Note] Event Scheduler: Loaded 0 events
mysql | 2017-04-25T21:42:18.847349Z 0 [Note] Executing 'SELECT * FROM INFORMATION_SCHEMA.TABLES;' to get a list of tables using the deprecated partition engine. You may use the startup option '--disable-partition-engine-check' to skip this check.
mysql | 2017-04-25T21:42:18.847366Z 0 [Note] Beginning of list of non-natively partitioned tables
mysql | 2017-04-25T21:42:18.980612Z 0 [Note] End of list of non-natively partitioned tables
mysql | 2017-04-25T21:42:18.980721Z 0 [Note] mysqld: ready for connections.
mysql | Version: '5.7.17-13'  socket: '/var/run/mysqld/mysqld.sock'  port: 3306  Percona Server (GPL), Release '13', Revision 'fd33d43'

[AleshchenkoMaksim]

@yosifkit can you show your docker-compose.yml file? You mount volume to host machine or use named volume?

[fcarreiro]

@kwek20 just reproduced it. With Windows 10, mariadb:10 and latest Docker Edge. I'll let him write the details. docker-compose file is

    image: mariadb:10
    container_name: dbname
    environment:
      MYSQL_ROOT_PASSWORD: devpassword
      MYSQL_DATABASE: somedb
    volumes:
      - ./mysqldata:/var/lib/mysql
    ports:
      - '3306:3306'

The official mysql:8 image did work. We are now trying the bitnami versions. It looks like indeed this could be fixed. Do we at least know what is going wrong? I mean, if it is something from the MariaDB binaries or if it is really related to the docker image.

[yosifkit]

Here is my compose file. I used docker 17.04.0-ce, Windows 10 Home, Oracle VirtualBox using the default Shared Folders that docker-toobox creates for the VM (C:\Users), run from a folder in my user directory c:\Users\my-user\docker\

version: '2'
services:
  db:
    image: percona:5.7.17
    volumes:
      - ./sql-data/db:/var/lib/mysql
    container_name: sql-server
    environment:
      MYSQL_ROOT_PASSWORD: 1234
      MYSQL_DATABASE: db
      MYSQL_USER: db_user
      MYSQL_PASSWORD: 1234_

[yosifkit]

I set up a minimal compose file to test all current versions of mariadb, mysql, and percona each with a directory shared from the host. So far from my testing, the only one failing is mariadb:10.1.

docker-compose.yml for running all 10 sql servers

You'll need a VM with enough memory if you want to test all 10 at once; 1 GB was not enough. 😮

version: '2'
services:
  mysql8.1:
    image: mysql:8.0.1
    volumes:
      - ./sql-data/mysql-8.0.1:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  mysql5.7:
    image: mysql:5.7.18
    volumes:
      - ./sql-data/mysql-5.7.18:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  mysql5.6:
    image: mysql:5.6.36
    volumes:
      - ./sql-data/mysql-5.6.36:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  mysql5.5:
    image: mysql:5.5.55
    volumes:
      - ./sql-data/mysql-5.5.55:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  maria10.1:
    image: mariadb:10.1.22
    volumes:
      - ./sql-data/mariadb-10.1.22:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  maria10.0:
    image: mariadb:10.0.30
    volumes:
      - ./sql-data/mariadb-10.0.30:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  maria5.5:
    image: mariadb:5.5.55
    volumes:
      - ./sql-data/mariadb-5.5.55:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  percona5.7:
    image: percona:5.7.17
    volumes:
      - ./sql-data/percona-5.7.17:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  percona5.6:
    image: percona:5.6.35
    volumes:
      - ./sql-data/percona-5.6.35:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

  percona5.5:
    image: percona:5.5.54
    volumes:
      - ./sql-data/percona-5.5.54:/var/lib/mysql
    environment:
      MYSQL_ROOT_PASSWORD: 1234

$ docker ps -a
CONTAINER ID        IMAGE               COMMAND                  CREATED             STATUS                     PORTS               NAMES
69039f90ce66        mysql:5.5.55        "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_mysql5.5_1
ce952aa6625d        mysql:5.7.18        "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_mysql5.7_1
4c875dcbb923        mysql:5.6.36        "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_mysql5.6_1
6090aee1e391        mariadb:10.1.22     "docker-entrypoint..."   9 minutes ago       Exited (1) 9 minutes ago                       docker_maria10.1_1
886bc7a398bb        mysql:8.0.1         "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_mysql8.1_1
1042b4b3bb27        mariadb:5.5.55      "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_maria5.5_1
c1424e0f9733        percona:5.7.17      "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_percona5.7_1
9a94804da8bc        mariadb:10.0.30     "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_maria10.0_1
7d36667bec6a        percona:5.6.35      "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_percona5.6_1
a7ac853e7c05        percona:5.5.54      "docker-entrypoint..."   9 minutes ago       Up 9 minutes               3306/tcp            docker_percona5.5_1

[fcarreiro]

Good point! Yes, I've read that this does work when you use Docker Toolbox and therefore a VM. The issue is with the latest Docker version, using Hyper-V in Windows 10. We tested mariadb:10 and mariadb:10.0 and both failed :/

…

On 28 April 2017 at 00:20, yosifkit ***@***.***> wrote: I set up a minimal compose file to test all current versions of mariadb, mysql, and percona each with a directory shared from the host. So far from my testing, the only one failing is mariadb:10.1. docker-compose.yml for running all 10 sql servers You'll need a VM with enough memory if you want to test all 10 at once; 1 GB was not enough. 😮 version: '2'services: mysql8.1: image: mysql:8.0.1 volumes: - ./sql-data/mysql-8.0.1:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 mysql5.7: image: mysql:5.7.18 volumes: - ./sql-data/mysql-5.7.18:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 mysql5.6: image: mysql:5.6.36 volumes: - ./sql-data/mysql-5.6.36:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 mysql5.5: image: mysql:5.5.55 volumes: - ./sql-data/mysql-5.5.55:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 maria10.1: image: mariadb:10.1.22 volumes: - ./sql-data/mariadb-10.1.22:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 maria10.0: image: mariadb:10.0.30 volumes: - ./sql-data/mariadb-10.0.30:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 maria5.5: image: mariadb:5.5.55 volumes: - ./sql-data/mariadb-5.5.55:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 percona5.7: image: percona:5.7.17 volumes: - ./sql-data/percona-5.7.17:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 percona5.6: image: percona:5.6.35 volumes: - ./sql-data/percona-5.6.35:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 percona5.5: image: percona:5.5.54 volumes: - ./sql-data/percona-5.5.54:/var/lib/mysql environment: MYSQL_ROOT_PASSWORD: 1234 $ docker ps -aCONTAINER ID IMAGE COMMAND CREATED STATUS PORTS NAMES69039f90ce66 mysql:5.5.55 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_mysql5.5_1ce952aa6625d mysql:5.7.18 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_mysql5.7_14c875dcbb923 mysql:5.6.36 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_mysql5.6_16090aee1e391 mariadb:10.1.22 "docker-entrypoint..." 9 minutes ago Exited (1) 9 minutes ago docker_maria10.1_1886bc7a398bb mysql:8.0.1 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_mysql8.1_11042b4b3bb27 mariadb:5.5.55 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_maria5.5_1c1424e0f9733 percona:5.7.17 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_percona5.7_19a94804da8bc mariadb:10.0.30 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_maria10.0_17d36667bec6a percona:5.6.35 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_percona5.6_1a7ac853e7c05 percona:5.5.54 "docker-entrypoint..." 9 minutes ago Up 9 minutes 3306/tcp docker_percona5.5_1 — You are receiving this because you commented. Reply to this email directly, view it on GitHub <#42 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AAeeLa1VxMwznDdkIsTxhrok4NwU11rPks5r0SKmgaJpZM4Ml1jC> .

[AleshchenkoMaksim]

@yosifkit you use Oracle VirtualBox or Hyper-V?
I use Hyper-V. All mysql containers was started successful. Percona 5.5 and 5.6 start ok. Percona 5.7 - fail.
All mariadb containers - fail.

[tianon]

Using Docker for Windows (NOT Docker Toolbox), I can reproduce the failure of the OP (Invalid argument causing InnoDB to fail to initialize) using mariadb:latest. 😞

[tianon]

(Now testing @yosifkit's insane docker-compose.yml -- hopefully my VM is big enough 😇)

[tianon]

Definitely successful using Docker for Windows (thus on Hyper-V):

• mysql:5.5
• mysql:5.6
• mysql:5.7
• mysql:8.0
• percona:5.5
• percona:5.6

Definitely failing (Invalid argument as described in the OP):

• mariadb:5.5
• mariadb:10.0
• mariadb:10.1
• percona:5.7

[Rakhmanov]

Working Using Docker for Windows:

• mysql:5.5.55
• mysql:5.6.36
• mysql:5.7.18
• mysql:8.0.1
• percona:5.5.541
• percona:5.6.35

Failing the rest.

That would be consistent with results above