collaborativebioinformatics
Popular repositories Loading
-
Disease_subsetting
Disease_subsetting PublicColorectal cancer CMs subtyping and personalized medication recommendation based on RNA seq pathway analysis
Repositories
- KGs_plus_Literature Public
Implement a system to use GNN and/or LLM to use knowledge graphs to integrate literature with knowledge graphs made from large public datasets (CIVIC, TCGA, CPTAC)
collaborativebioinformatics/KGs_plus_Literature’s past year of commit activity - Model_Garbage_Collection Public
Implement a system to prune erroneous model assertions in knowledge graphs derived from GNN and/or LLM models or agents.
collaborativebioinformatics/Model_Garbage_Collection’s past year of commit activity - Microbe_KG Public
Develop a knowledge graph linking microbiome compositions to various diseases and health conditions (e.g. Human Microbiome Project HMP)
collaborativebioinformatics/Microbe_KG’s past year of commit activity - Adding_Datasets_to_KG Public
Implement a system to combine existing knowledge graphs (e.g. DisGeNet) with primary datasets (e.g. TCGA, 1000 genomes)
collaborativebioinformatics/Adding_Datasets_to_KG’s past year of commit activity - Brain_connect_KG Public
Develop a knowledge graph linking brain connectivity data with neurological disorders to identify potential biomarkers (e.g. Human Connectome Project)
collaborativebioinformatics/Brain_connect_KG’s past year of commit activity - Proteomic_Genomic_Cancer_KG Public
Develop a graph neural network to integrate proteomic and genomic features for cancer subtype classification (e.g. CPTAC-2 and CPTAC-3 breast, colorectal, and ovarian cancer data)
collaborativebioinformatics/Proteomic_Genomic_Cancer_KG’s past year of commit activity - Cancer_target_KG Public
Build a knowledge graph integrating cancer genomics data to identify potential biomarkers and therapeutic targets (e.g. TCGA)
collaborativebioinformatics/Cancer_target_KG’s past year of commit activity - Variant_Drug_KG Public
Build a knowledge graph connecting variants, drugs, and clinical evidence to identify therapeutic opportunities (e.g. CIViC - Clinical Interpretations of Variants in Cancer)
collaborativebioinformatics/Variant_Drug_KG’s past year of commit activity
Top languages
Loading…
Most used topics
Loading…