Skip to content

Capture geo_ids not in case data #457

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Closed
wants to merge 1 commit into from
Closed

Capture geo_ids not in case data #457

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
6 changes: 4 additions & 2 deletions validator/scripts/unique_geoids.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,9 +2,11 @@ library(covidcast)

geo_types = c("county", "state", "hrr", "msa")
for(type in geo_types){
dtf = covidcast_signal("indicator-combination", "confirmed_7dav_incidence_num", start_day = "2020-10-01", end_day = "2020-10-01", geo_type = type)
dtf_deaths = covidcast_signal("jhu-csse" ,"deaths_incidence_num", start_day = "2020-10-01", end_day = "2020-10-01", geo_type = type)
dtf_cases = covidcast_signal("indicator-combination", "confirmed_7dav_incidence_num", start_day = "2020-10-01", end_day = "2020-10-01", geo_type = type)
unique_geo_values = sort(union(dtf_deaths$geo_value, dtf_cases$geo_value))
file_name = paste0("../static/", type, "_geo.csv")
write.table(unique(dtf$geo_value), file = file_name, row.names = F, col.names = "geo_id")
write.table(unique_geo_values, file = file_name, row.names = F, col.names = "geo_id")
}

dtf = covidcast_signal("ght", "raw_search", start_day = "2020-10-01", end_day = "2020-10-01", geo_type = "dma")
Expand Down
87 changes: 87 additions & 0 deletions validator/static/county_geo.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -94,6 +94,7 @@
"02230"
"02240"
"02261"
"02270"
"02275"
"02282"
"02290"
Expand Down Expand Up @@ -326,6 +327,7 @@
"10001"
"10003"
"10005"
"11000"
"11001"
"12000"
"12001"
Expand Down Expand Up @@ -2458,6 +2460,7 @@
"46107"
"46109"
"46111"
"46113"
"46115"
"46117"
"46119"
Expand Down Expand Up @@ -3191,4 +3194,88 @@
"56041"
"56043"
"56045"
"60000"
"66000"
"69000"
"72000"
"72001"
"72003"
"72005"
"72007"
"72009"
"72011"
"72013"
"72015"
"72017"
"72019"
"72021"
"72023"
"72025"
"72027"
"72029"
"72031"
"72033"
"72035"
"72037"
"72039"
"72041"
"72043"
"72045"
"72047"
"72049"
"72051"
"72053"
"72054"
"72055"
"72057"
"72059"
"72061"
"72063"
"72065"
"72067"
"72069"
"72071"
"72073"
"72075"
"72077"
"72079"
"72081"
"72083"
"72085"
"72087"
"72089"
"72091"
"72093"
"72095"
"72097"
"72099"
"72101"
"72103"
"72105"
"72107"
"72109"
"72111"
"72113"
"72115"
"72117"
"72119"
"72121"
"72123"
"72125"
"72127"
"72129"
"72131"
"72133"
"72135"
"72137"
"72139"
"72141"
"72143"
"72145"
"72147"
"72149"
"72151"
"72153"
"72888"
"72999"
"78000"
11 changes: 11 additions & 0 deletions validator/static/msa_geo.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,6 @@
"geo_id"
"10180"
"10380"
"10420"
"10500"
"10540"
Expand All @@ -14,6 +15,7 @@
"11460"
"11500"
"11540"
"11640"
"11700"
"12020"
"12060"
Expand Down Expand Up @@ -144,11 +146,13 @@
"24660"
"24780"
"24860"
"25020"
"25060"
"25180"
"25220"
"25260"
"25420"
"25500"
"25540"
"25620"
"25860"
Expand All @@ -175,6 +179,7 @@
"27780"
"27860"
"27900"
"27980"
"28020"
"28100"
"28140"
Expand Down Expand Up @@ -218,6 +223,7 @@
"31740"
"31860"
"31900"
"32420"
"32580"
"32780"
"32820"
Expand Down Expand Up @@ -272,6 +278,7 @@
"38300"
"38340"
"38540"
"38660"
"38860"
"38900"
"38940"
Expand Down Expand Up @@ -309,7 +316,9 @@
"41700"
"41740"
"41860"
"41900"
"41940"
"41980"
"42020"
"42100"
"42140"
Expand All @@ -334,6 +343,7 @@
"44180"
"44220"
"44300"
"44420"
"44700"
"44940"
"45060"
Expand Down Expand Up @@ -376,6 +386,7 @@
"49180"
"49340"
"49420"
"49500"
"49620"
"49660"
"49700"
Expand Down