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SparkR Support #507
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foxish
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apache-spark-on-k8s:branch-2.2-kubernetes
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bloomberg:branch-2.2-kubernetes
Oct 18, 2017
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SparkR Support #507
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d376bb5
initial R support without integration tests
ifilonenko d3af8f5
finished sparkR integration
ifilonenko 0b9210c
case sensitive file names in unix
ifilonenko e539922
revert back to previous lower case in dockerfile
ifilonenko 71bbbf0
addition into the build-push-docker-images
ifilonenko c8a4bc3
Merge branch 'branch-2.2-kubernetes' into branch-2.2-kubernetes
mccheah b092ed4
merge conflicts
ifilonenko e5f606d
Merge branch 'branch-2.2-kubernetes' of https://github.com/bloomberg/…
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36 changes: 36 additions & 0 deletions
36
...kubernetes/core/src/main/scala/org/apache/spark/deploy/k8s/submit/submitsteps/RStep.scala
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|---|---|---|
| @@ -0,0 +1,36 @@ | ||
| /* | ||
| * Licensed to the Apache Software Foundation (ASF) under one or more | ||
| * contributor license agreements. See the NOTICE file distributed with | ||
| * this work for additional information regarding copyright ownership. | ||
| * The ASF licenses this file to You under the Apache License, Version 2.0 | ||
| * (the "License"); you may not use this file except in compliance with | ||
| * the License. You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
| package org.apache.spark.deploy.k8s.submit.submitsteps | ||
|
|
||
| import io.fabric8.kubernetes.api.model.ContainerBuilder | ||
|
|
||
| import org.apache.spark.deploy.k8s.constants._ | ||
| import org.apache.spark.deploy.k8s.submit.KubernetesFileUtils | ||
|
|
||
| private[spark] class RStep( | ||
| mainRFile: String, | ||
| filesDownloadPath: String) extends DriverConfigurationStep { | ||
|
|
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| override def configureDriver(driverSpec: KubernetesDriverSpec): KubernetesDriverSpec = { | ||
| val withRFileContainer = new ContainerBuilder(driverSpec.driverContainer) | ||
| .addNewEnv() | ||
| .withName(ENV_R_FILE) | ||
| .withValue(KubernetesFileUtils.resolveFilePath(mainRFile, filesDownloadPath)) | ||
| .endEnv() | ||
| driverSpec.copy(driverContainer = withRFileContainer.build()) | ||
| } | ||
| } |
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64 changes: 64 additions & 0 deletions
64
...netes/core/src/test/scala/org/apache/spark/deploy/k8s/submit/submitsteps/RStepSuite.scala
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,64 @@ | ||
| /* | ||
| * Licensed to the Apache Software Foundation (ASF) under one or more | ||
| * contributor license agreements. See the NOTICE file distributed with | ||
| * this work for additional information regarding copyright ownership. | ||
| * The ASF licenses this file to You under the Apache License, Version 2.0 | ||
| * (the "License"); you may not use this file except in compliance with | ||
| * the License. You may obtain a copy of the License at | ||
| * | ||
| * http://www.apache.org/licenses/LICENSE-2.0 | ||
| * | ||
| * Unless required by applicable law or agreed to in writing, software | ||
| * distributed under the License is distributed on an "AS IS" BASIS, | ||
| * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| * See the License for the specific language governing permissions and | ||
| * limitations under the License. | ||
| */ | ||
| package org.apache.spark.deploy.k8s.submit.submitsteps | ||
|
|
||
| import io.fabric8.kubernetes.api.model._ | ||
| import org.scalatest.BeforeAndAfter | ||
| import scala.collection.JavaConverters._ | ||
|
|
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| import org.apache.spark.{SparkConf, SparkFunSuite} | ||
|
|
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| class RStepSuite extends SparkFunSuite with BeforeAndAfter { | ||
| private val FILE_DOWNLOAD_PATH = "/var/data/spark-files" | ||
| private val R_PRIMARY_FILE_OP1 = "local:///app/files/file1.R" | ||
| private val RESOLVED_R_PRIMARY_FILE_OP1 = "/app/files/file1.R" | ||
| private val R_PRIMARY_FILE_OP2 = "file:///app/files/file2.R" | ||
| private val RESOLVED_R_PRIMARY_FILE_OP2 = FILE_DOWNLOAD_PATH + "/file2.R" | ||
|
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| test("testing RSpark with local file") { | ||
| val rStep = new RStep( | ||
| R_PRIMARY_FILE_OP1, | ||
| FILE_DOWNLOAD_PATH) | ||
| val returnedDriverContainer = rStep.configureDriver( | ||
| KubernetesDriverSpec( | ||
| new Pod(), | ||
| new Container(), | ||
| Seq.empty[HasMetadata], | ||
| new SparkConf)) | ||
| assert(returnedDriverContainer.driverContainer.getEnv | ||
| .asScala.map(env => (env.getName, env.getValue)).toMap === | ||
| Map( | ||
| "R_FILE" -> RESOLVED_R_PRIMARY_FILE_OP1)) | ||
| } | ||
|
|
||
| test("testing RSpark with remote file") { | ||
| val rStep = new RStep( | ||
| R_PRIMARY_FILE_OP2, | ||
| FILE_DOWNLOAD_PATH) | ||
| val returnedDriverContainer = rStep.configureDriver( | ||
| KubernetesDriverSpec( | ||
| new Pod(), | ||
| new Container(), | ||
| Seq.empty[HasMetadata], | ||
| new SparkConf)) | ||
| assert(returnedDriverContainer.driverContainer.getEnv | ||
| .asScala.map(env => (env.getName, env.getValue)).toMap === | ||
| Map( | ||
| "R_FILE" -> RESOLVED_R_PRIMARY_FILE_OP2)) | ||
| } | ||
|
|
||
| } |
39 changes: 39 additions & 0 deletions
39
resource-managers/kubernetes/docker-minimal-bundle/src/main/docker/driver-r/Dockerfile
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| @@ -0,0 +1,39 @@ | ||
| # | ||
| # Licensed to the Apache Software Foundation (ASF) under one or more | ||
| # contributor license agreements. See the NOTICE file distributed with | ||
| # this work for additional information regarding copyright ownership. | ||
| # The ASF licenses this file to You under the Apache License, Version 2.0 | ||
| # (the "License"); you may not use this file except in compliance with | ||
| # the License. You may obtain a copy of the License at | ||
| # | ||
| # http://www.apache.org/licenses/LICENSE-2.0 | ||
| # | ||
| # Unless required by applicable law or agreed to in writing, software | ||
| # distributed under the License is distributed on an "AS IS" BASIS, | ||
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| # See the License for the specific language governing permissions and | ||
| # limitations under the License. | ||
| # | ||
|
|
||
| FROM spark-base | ||
|
|
||
| # If this docker file is being used in the context of building your images from a Spark distribution, the docker build | ||
| # command should be invoked from the top level directory of the Spark distribution. E.g.: | ||
| # docker build -t spark-driver-r:latest -f dockerfiles/driver-r/Dockerfile . | ||
|
|
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| ADD examples /opt/spark/examples | ||
| ADD R /opt/spark/R | ||
|
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| RUN apk add --no-cache R R-dev | ||
|
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| ENV R_HOME /usr/lib/R | ||
|
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| CMD SPARK_CLASSPATH="${SPARK_HOME}/jars/*" && \ | ||
| env | grep SPARK_JAVA_OPT_ | sed 's/[^=]*=\(.*\)/\1/g' > /tmp/java_opts.txt && \ | ||
| readarray -t SPARK_DRIVER_JAVA_OPTS < /tmp/java_opts.txt && \ | ||
| if ! [ -z ${SPARK_MOUNTED_CLASSPATH+x} ]; then SPARK_CLASSPATH="$SPARK_MOUNTED_CLASSPATH:$SPARK_CLASSPATH"; fi && \ | ||
| if ! [ -z ${SPARK_SUBMIT_EXTRA_CLASSPATH+x} ]; then SPARK_CLASSPATH="$SPARK_SUBMIT_EXTRA_CLASSPATH:$SPARK_CLASSPATH"; fi && \ | ||
| if ! [ -z ${SPARK_EXTRA_CLASSPATH+x} ]; then SPARK_CLASSPATH="$SPARK_EXTRA_CLASSPATH:$SPARK_CLASSPATH"; fi && \ | ||
| if ! [ -z ${SPARK_MOUNTED_FILES_DIR+x} ]; then cp -R "$SPARK_MOUNTED_FILES_DIR/." .; fi && \ | ||
| if ! [ -z ${SPARK_MOUNTED_FILES_FROM_SECRET_DIR+x} ]; then cp -R "$SPARK_MOUNTED_FILES_FROM_SECRET_DIR/." .; fi && \ | ||
| ${JAVA_HOME}/bin/java "${SPARK_DRIVER_JAVA_OPTS[@]}" -cp $SPARK_CLASSPATH -Xms$SPARK_DRIVER_MEMORY -Xmx$SPARK_DRIVER_MEMORY $SPARK_DRIVER_CLASS $R_FILE $SPARK_DRIVER_ARGS |
38 changes: 38 additions & 0 deletions
38
resource-managers/kubernetes/docker-minimal-bundle/src/main/docker/executor-r/Dockerfile
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|---|---|---|
| @@ -0,0 +1,38 @@ | ||
| # | ||
| # Licensed to the Apache Software Foundation (ASF) under one or more | ||
| # contributor license agreements. See the NOTICE file distributed with | ||
| # this work for additional information regarding copyright ownership. | ||
| # The ASF licenses this file to You under the Apache License, Version 2.0 | ||
| # (the "License"); you may not use this file except in compliance with | ||
| # the License. You may obtain a copy of the License at | ||
| # | ||
| # http://www.apache.org/licenses/LICENSE-2.0 | ||
| # | ||
| # Unless required by applicable law or agreed to in writing, software | ||
| # distributed under the License is distributed on an "AS IS" BASIS, | ||
| # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. | ||
| # See the License for the specific language governing permissions and | ||
| # limitations under the License. | ||
| # | ||
|
|
||
| FROM spark-base | ||
|
|
||
| # If this docker file is being used in the context of building your images from a Spark distribution, the docker build | ||
| # command should be invoked from the top level directory of the Spark distribution. E.g.: | ||
| # docker build -t spark-executor-r:latest -f dockerfiles/executor-r/Dockerfile . | ||
|
|
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| ADD examples /opt/spark/examples | ||
| ADD R /opt/spark/R | ||
|
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| RUN apk add --no-cache R R-dev | ||
|
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| ENV R_HOME /usr/lib/R | ||
|
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| CMD SPARK_CLASSPATH="${SPARK_HOME}/jars/*" && \ | ||
| env | grep SPARK_JAVA_OPT_ | sed 's/[^=]*=\(.*\)/\1/g' > /tmp/java_opts.txt && \ | ||
| readarray -t SPARK_EXECUTOR_JAVA_OPTS < /tmp/java_opts.txt && \ | ||
| if ! [ -z ${SPARK_MOUNTED_CLASSPATH}+x} ]; then SPARK_CLASSPATH="$SPARK_MOUNTED_CLASSPATH:$SPARK_CLASSPATH"; fi && \ | ||
| if ! [ -z ${SPARK_EXECUTOR_EXTRA_CLASSPATH+x} ]; then SPARK_CLASSPATH="$SPARK_EXECUTOR_EXTRA_CLASSPATH:$SPARK_CLASSPATH"; fi && \ | ||
| if ! [ -z ${SPARK_MOUNTED_FILES_DIR+x} ]; then cp -R "$SPARK_MOUNTED_FILES_DIR/." .; fi && \ | ||
| if ! [ -z ${SPARK_MOUNTED_FILES_FROM_SECRET_DIR+x} ]; then cp -R "$SPARK_MOUNTED_FILES_FROM_SECRET_DIR/." .; fi && \ | ||
| ${JAVA_HOME}/bin/java "${SPARK_EXECUTOR_JAVA_OPTS[@]}" -Dspark.executor.port=$SPARK_EXECUTOR_PORT -Xms$SPARK_EXECUTOR_MEMORY -Xmx$SPARK_EXECUTOR_MEMORY -cp $SPARK_CLASSPATH org.apache.spark.executor.CoarseGrainedExecutorBackend --driver-url $SPARK_DRIVER_URL --executor-id $SPARK_EXECUTOR_ID --cores $SPARK_EXECUTOR_CORES --app-id $SPARK_APPLICATION_ID --hostname $SPARK_EXECUTOR_POD_IP |
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Important here that, similar to Python Primary Resource, that the R File is distributed via --files.