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subset and merge for VarInfo #543

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subset and merge for VarInfo #543

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4de2a01
link and invlink should correctly work with Selector etc.
torfjelde Oct 7, 2023
1e4d9f1
more fixes to link and invlink
torfjelde Oct 7, 2023
bf4fcc6
formatting
torfjelde Oct 7, 2023
f1fde0b
added simple tests for usage of selectors
torfjelde Oct 7, 2023
67770d3
bumped patch version
torfjelde Oct 7, 2023
4bf5f7c
fied typos
torfjelde Oct 7, 2023
d15df29
added missing _getvns_link for UntypedVarInfo
torfjelde Oct 8, 2023
203aeb3
simplify `_getvns_link` for TypedVarInfo
torfjelde Oct 8, 2023
b170c0b
Update src/varinfo.jl
torfjelde Oct 8, 2023
1086731
added Compat as dep so we can make use of certain features, e.g. Returns
torfjelde Oct 9, 2023
69055b2
added `subset` which can extract a subset of the varinfo
torfjelde Oct 8, 2023
266c2d6
added testing of `subset` for `VarInfo`
torfjelde Oct 8, 2023
859edfb
formatting
torfjelde Oct 8, 2023
e2e1db7
added implementation of `merge` for `VarInfo` and tests for it
torfjelde Oct 8, 2023
a90f2b9
more tests
torfjelde Oct 8, 2023
1d8d507
formatting
torfjelde Oct 8, 2023
2882fbc
improved merge_metadata for NamedTuple inputs
torfjelde Oct 9, 2023
e281e1f
added proper handling of the `vals` in `subset`
torfjelde Oct 9, 2023
f54abd2
added docs for `subset` and `merge`
torfjelde Oct 9, 2023
cb61b1c
added `subset` and `merge` to documentation
torfjelde Oct 9, 2023
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16 changes: 9 additions & 7 deletions Project.toml
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Original file line number Diff line number Diff line change
@@ -1,13 +1,14 @@
name = "DynamicPPL"
uuid = "366bfd00-2699-11ea-058f-f148b4cae6d8"
version = "0.23.18"
version = "0.23.19"

[deps]
AbstractMCMC = "80f14c24-f653-4e6a-9b94-39d6b0f70001"
AbstractPPL = "7a57a42e-76ec-4ea3-a279-07e840d6d9cf"
BangBang = "198e06fe-97b7-11e9-32a5-e1d131e6ad66"
Bijectors = "76274a88-744f-5084-9051-94815aaf08c4"
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
Compat = "34da2185-b29b-5c13-b0c7-acf172513d20"
ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9"
Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f"
DocStringExtensions = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
Expand All @@ -21,13 +22,20 @@ Setfield = "efcf1570-3423-57d1-acb7-fd33fddbac46"
Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
ZygoteRules = "700de1a5-db45-46bc-99cf-38207098b444"

[weakdeps]
MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"

[extensions]
DynamicPPLMCMCChainsExt = ["MCMCChains"]

[compat]
AbstractMCMC = "2, 3.0, 4"
AbstractPPL = "0.6"
BangBang = "0.3"
Bijectors = "0.13"
ChainRulesCore = "0.9.7, 0.10, 1"
ConstructionBase = "1.5.4"
Compat = "4"
Distributions = "0.23.8, 0.24, 0.25"
DocStringExtensions = "0.8, 0.9"
LogDensityProblems = "2"
Expand All @@ -39,11 +47,5 @@ Setfield = "0.7.1, 0.8, 1"
ZygoteRules = "0.2"
julia = "1.6"

[extensions]
DynamicPPLMCMCChainsExt = ["MCMCChains"]

[extras]
MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"

[weakdeps]
MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d"
2 changes: 2 additions & 0 deletions docs/src/api.md
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Expand Up @@ -255,6 +255,8 @@ DynamicPPL.reconstruct
#### Utils

```@docs
Base.merge(::VarInfo, ::VarInfo)
DynamicPPL.subset
DynamicPPL.unflatten
DynamicPPL.tonamedtuple
DynamicPPL.varname_leaves
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1 change: 1 addition & 0 deletions src/DynamicPPL.jl
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Expand Up @@ -47,6 +47,7 @@ export AbstractVarInfo,
SimpleVarInfo,
push!!,
empty!!,
subset,
getlogp,
setlogp!!,
acclogp!!,
Expand Down
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