Remove cftime.utime #59
                
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This PR removes all deprecated calls of
cftime.utimeand uses the "new" way.Made some pep8 fixes because the
pep8cli was asking for them.There are
21 errorsleft. They are unrelated to this PR, but seem to come from changes incftimetoo. I will dig a bit more.EDIT: Fixed the error relating to 360_day calendar. Many calls to
cftime.datetimewere missing the calendar, I added it as this was the issue at least for that error. Also followed to instruction of aDeprecationWarningand changednp.objecttoobject.