Splitattrs ncsave redo

lib/iris/__init__.py

@@ -142,7 +142,9 @@ def callback(cube, field, filename):
 class Future(threading.local):
     """Run-time configuration controller."""
 
-    def __init__(self, datum_support=False, pandas_ndim=False):
+    def __init__(
+        self, datum_support=False, pandas_ndim=False, save_split_attrs=False
+    ):
         """
         A container for run-time options controls.
 
@@ -164,6 +166,11 @@ def __init__(self, datum_support=False, pandas_ndim=False):
         pandas_ndim : bool, default=False
             See :func:`iris.pandas.as_data_frame` for details - opts in to the
             newer n-dimensional behaviour.
+        save_split_attrs : bool, default=False
+            Save "global" and "local" cube attributes to netcdf in appropriately
+            different ways :  "global" ones are saved as dataset attributes, where
+            possible, while "local" ones are saved as data-variable attributes.
+            See :func:`iris.fileformats.netcdf.saver.save`.
 
         """
         # The flag 'example_future_flag' is provided as a reference for the
@@ -175,12 +182,15 @@ def __init__(self, datum_support=False, pandas_ndim=False):
         # self.__dict__['example_future_flag'] = example_future_flag
         self.__dict__["datum_support"] = datum_support
         self.__dict__["pandas_ndim"] = pandas_ndim
+        self.__dict__["save_split_attrs"] = save_split_attrs
 
     def __repr__(self):
         # msg = ('Future(example_future_flag={})')
         # return msg.format(self.example_future_flag)
-        msg = "Future(datum_support={}, pandas_ndim={})"
-        return msg.format(self.datum_support, self.pandas_ndim)
+        msg = "Future(datum_support={}, pandas_ndim={}, save_split_attrs={})"
+        return msg.format(
+            self.datum_support, self.pandas_ndim, self.save_split_attrs
+        )
 
     # deprecated_options = {'example_future_flag': 'warning',}
     deprecated_options = {}

lib/iris/cube.py

@@ -930,19 +930,19 @@ def _normalise_attrs(
         return attributes
 
     @property
-    def locals(self):
+    def locals(self) -> LimitedAttributeDict:
         return self._locals
 
     @locals.setter
-    def locals(self, attributes):
+    def locals(self, attributes: Optional[Mapping]):
         self._locals = self._normalise_attrs(attributes)
 
     @property
-    def globals(self):
+    def globals(self) -> LimitedAttributeDict:
         return self._globals
 
     @globals.setter
-    def globals(self, attributes):
+    def globals(self, attributes: Optional[Mapping]):
         self._globals = self._normalise_attrs(attributes)
 
     #
@@ -1335,8 +1335,12 @@ def _names(self):
     #
     # Ensure that .attributes is always a :class:`CubeAttrsDict`.
     #
-    @CFVariableMixin.attributes.setter
-    def attributes(self, attributes):
+    @property
+    def attributes(self) -> CubeAttrsDict:
+        return super().attributes
+
+    @attributes.setter
+    def attributes(self, attributes: Optional[Mapping]):
         """
         An override to CfVariableMixin.attributes.setter, which ensures that Cube
         attributes are stored in a way which distinguishes global + local ones.

lib/iris/fileformats/netcdf/saver.py

@@ -541,6 +541,10 @@ def write(
             matching keys will become attributes on the data variable rather
             than global attributes.
 
+            .. Note::
+
+                Has no effect if :attr:`iris.FUTURE.save_split_attrs` is ``True``.
+
         * unlimited_dimensions (iterable of strings and/or
            :class:`iris.coords.Coord` objects):
             List of coordinate names (or coordinate objects)
@@ -633,6 +637,9 @@ def write(
             3 files that do not use HDF5.
 
         """
+        # TODO: when iris.FUTURE.save_split_attrs defaults to True, we can deprecate the
+        #  "local_keys" arg, and finally remove it when we finally remove the
+        #  save_split_attrs switch.
         if unlimited_dimensions is None:
             unlimited_dimensions = []
 
@@ -709,20 +716,23 @@ def write(
         # aux factory in the cube.
         self._add_aux_factories(cube, cf_var_cube, cube_dimensions)
 
-        # Add data variable-only attribute names to local_keys.
-        if local_keys is None:
-            local_keys = set()
-        else:
-            local_keys = set(local_keys)
-        local_keys.update(_CF_DATA_ATTRS, _UKMO_DATA_ATTRS)
-
-        # Add global attributes taking into account local_keys.
-        global_attributes = {
-            k: v
-            for k, v in cube.attributes.items()
-            if (k not in local_keys and k.lower() != "conventions")
-        }
-        self.update_global_attributes(global_attributes)
+        if not iris.FUTURE.save_split_attrs:
+            # In the "old" way, we update global attributes as we go.
+            # Add data variable-only attribute names to local_keys.
+            if local_keys is None:
+                local_keys = set()
+            else:
+                local_keys = set(local_keys)
+            local_keys.update(_CF_DATA_ATTRS, _UKMO_DATA_ATTRS)
+
+            # Add global attributes taking into account local_keys.
+            cube_attributes = cube.attributes
+            global_attributes = {
+                k: v
+                for k, v in cube_attributes.items()
+                if (k not in local_keys and k.lower() != "conventions")
+            }
+            self.update_global_attributes(global_attributes)
 
         if cf_profile_available:
             cf_patch = iris.site_configuration.get("cf_patch")
@@ -778,6 +788,9 @@ def update_global_attributes(self, attributes=None, **kwargs):
             CF global attributes to be updated.
 
         """
+        # TODO: when when iris.FUTURE.save_split_attrs is removed, this routine will
+        # only be called once: it can reasonably be renamed "_set_global_attributes",
+        # and the 'kwargs' argument can be removed.
         if attributes is not None:
             # Handle sequence e.g. [('fruit', 'apple'), ...].
             if not hasattr(attributes, "keys"):
@@ -2195,6 +2208,8 @@ def _create_cf_data_variable(
         """
         Create CF-netCDF data variable for the cube and any associated grid
         mapping.
+        # TODO: when iris.FUTURE.save_split_attrs is removed, the 'local_keys' arg can
+        # be removed.
 
         Args:
 
@@ -2219,6 +2234,8 @@ def _create_cf_data_variable(
             The newly created CF-netCDF data variable.
 
         """
+        # TODO: when iris.FUTURE.save_split_attrs is removed, the 'local_keys' arg can
+        # be removed.
         # Get the values in a form which is valid for the file format.
         data = self._ensure_valid_dtype(cube.core_data(), "cube", cube)
 
@@ -2307,16 +2324,20 @@ def set_packing_ncattrs(cfvar):
         if cube.units.calendar:
             _setncattr(cf_var, "calendar", cube.units.calendar)
 
-        # Add data variable-only attribute names to local_keys.
-        if local_keys is None:
-            local_keys = set()
+        if iris.FUTURE.save_split_attrs:
+            attr_names = cube.attributes.locals.keys()
         else:
-            local_keys = set(local_keys)
-        local_keys.update(_CF_DATA_ATTRS, _UKMO_DATA_ATTRS)
+            # Add data variable-only attribute names to local_keys.
+            if local_keys is None:
+                local_keys = set()
+            else:
+                local_keys = set(local_keys)
+            local_keys.update(_CF_DATA_ATTRS, _UKMO_DATA_ATTRS)
+
+            # Add any cube attributes whose keys are in local_keys as
+            # CF-netCDF data variable attributes.
+            attr_names = set(cube.attributes).intersection(local_keys)
 
-        # Add any cube attributes whose keys are in local_keys as
-        # CF-netCDF data variable attributes.
-        attr_names = set(cube.attributes).intersection(local_keys)
         for attr_name in sorted(attr_names):
             # Do not output 'conventions' attribute.
             if attr_name.lower() == "conventions":
@@ -2600,9 +2621,15 @@ def save(
     Save cube(s) to a netCDF file, given the cube and the filename.
 
     * Iris will write CF 1.7 compliant NetCDF files.
-    * The attributes dictionaries on each cube in the saved cube list
-      will be compared and common attributes saved as NetCDF global
-      attributes where appropriate.
+    * **If split-attribute saving is disabled**, i.e.
+      :data:`iris.FUTURE`\\ ``.save_split_attrs`` is ``False``, then attributes
+      dictionaries on each cube in the saved cube list will be compared, and common
+      attributes saved as NetCDF global attributes where appropriate.
+
+      Or, **when split-attribute saving is enabled**, then ``cube.attributes.locals``
+      are always saved as attributes of data-variables, and ``cube.attributes.globals``
+      are saved as global (dataset) attributes, where possible.
+      Since the 2 types are now distinguished : see :class:`~iris.cube.CubeAttrsDict`.
     * Keyword arguments specifying how to save the data are applied
       to each cube. To use different settings for different cubes, use
       the NetCDF Context manager (:class:`~Saver`) directly.
@@ -2635,6 +2662,8 @@ def save(
         An interable of cube attribute keys. Any cube attributes with
         matching keys will become attributes on the data variable rather
         than global attributes.
+        **NOTE:** this is *ignored* if 'split-attribute saving' is **enabled**,
+        i.e. when ``iris.FUTURE.save_split_attrs`` is ``True``.
 
     * unlimited_dimensions (iterable of strings and/or
        :class:`iris.coords.Coord` objects):
@@ -2773,26 +2802,114 @@ def save(
     else:
         cubes = cube
 
-    if local_keys is None:
+    # Decide which cube attributes will be saved as "global" attributes
+    # NOTE: in 'legacy' mode, when iris.FUTURE.save_split_attrs == False, this code
+    # section derives a common value for 'local_keys', which is passed to 'Saver.write'
+    # when saving each input cube.  The global attributes are then created by a call
+    # to "Saver.update_global_attributes" within each 'Saver.write' call (which is
+    # obviously a bit redundant!), plus an extra one to add 'Conventions'.
+    # HOWEVER, in `split_attrs` mode (iris.FUTURE.save_split_attrs == False), this code
+    # instead constructs a 'global_attributes' dictionary, and outputs that just once,
+    # after writing all the input cubes.
+    if iris.FUTURE.save_split_attrs:
+        # We don't actually use 'local_keys' in this case.
+        # TODO: can remove this when the iris.FUTURE.save_split_attrs is removed.
         local_keys = set()
+
+        # Find any collisions in the cube global attributes and "demote" all those to
+        # local attributes (where possible, else warn they are lost).
+        # N.B. "collision" includes when not all cubes *have* that attribute.
+        global_names = set()
+        for cube in cubes:
+            global_names |= set(cube.attributes.globals.keys())
+
+        # Fnd any global attributes which are not the same on *all* cubes.
+        def attr_values_equal(val1, val2):
+            # An equality test which also works when some values are numpy arrays (!)
+            # As done in :meth:`iris.common.mixin.LimitedAttributeDict.__eq__`.
+            match = val1 == val2
+            try:
+                match = bool(match)
+            except ValueError:
+                match = match.all()
+            return match
+
+        cube0 = cubes[0]
+        invalid_globals = set(
+            [
+                attrname
+                for attrname in global_names
+                if not all(
+                    attr_values_equal(
+                        cube.attributes.globals.get(attrname),
+                        cube0.attributes.globals.get(attrname),
+                    )
+                    for cube in cubes[1:]
+                )
+            ]
+        )
+
+        # Establish all the global attributes which we will write to the file (at end).
+        global_attributes = {
+            attr: cube0.attributes.globals.get(attr)
+            for attr in global_names - invalid_globals
+        }
+        if invalid_globals:
+            # Some cubes have different global attributes: modify cubes as required.
+            warnings.warn(
+                f"Saving the cube global attributes {sorted(invalid_globals)} as local "
+                "(i.e. data-variable) attributes, where possible, since they are not "
+                "the same on all input cubes."
+            )
+            cubes = cubes.copy()  # avoiding modifying the actual input arg.
+            for i_cube in range(len(cubes)):
+                # We iterate over cube *index*, so we can replace the list entries with
+                # with cube *copies* -- just to avoid changing our call args.
+                cube = cubes[i_cube]
+                demote_attrs = set(cube.attributes.globals) & invalid_globals
+                if any(demote_attrs):
+                    # Catch any demoted attrs where there is already a local version
+                    blocked_attrs = demote_attrs & set(cube.attributes.locals)
+                    if blocked_attrs:
+                        warnings.warn(
+                            f"Global cube attributes {sorted(blocked_attrs)} "
+                            f'of cube "{cube.name()}" were not saved, overlaid '
+                            "by existing local attributes with the same names."
+                        )
+                    demote_attrs -= blocked_attrs
+                    if demote_attrs:
+                        # This cube contains some 'demoted' global attributes.
+                        # Replace input cube with a copy, so we can modify attributes.
+                        cube = cube.copy()
+                        cubes[i_cube] = cube
+                        for attr in demote_attrs:
+                            # move global to local
+                            value = cube.attributes.globals.pop(attr)
+                            cube.attributes.locals[attr] = value
+
     else:
-        local_keys = set(local_keys)
-
-    # Determine the attribute keys that are common across all cubes and
-    # thereby extend the collection of local_keys for attributes
-    # that should be attributes on data variables.
-    attributes = cubes[0].attributes
-    common_keys = set(attributes)
-    for cube in cubes[1:]:
-        keys = set(cube.attributes)
-        local_keys.update(keys.symmetric_difference(common_keys))
-        common_keys.intersection_update(keys)
-        different_value_keys = []
-        for key in common_keys:
-            if np.any(attributes[key] != cube.attributes[key]):
-                different_value_keys.append(key)
-        common_keys.difference_update(different_value_keys)
-        local_keys.update(different_value_keys)
+        # Legacy mode: calculate "local_keys" to control which attributes are local
+        # and which global.
+        if local_keys is None:
+            local_keys = set()
+        else:
+            local_keys = set(local_keys)
+
+        # Determine the attribute keys that are common across all cubes and
+        # thereby extend the collection of local_keys for attributes
+        # that should be attributes on data variables.
+        attributes = cubes[0].attributes
+        common_keys = set(attributes)
+        for cube in cubes[1:]:
+            keys = set(cube.attributes)
+            local_keys.update(keys.symmetric_difference(common_keys))
+            common_keys.intersection_update(keys)
+            different_value_keys = []
+            for key in common_keys:
+                if np.any(attributes[key] != cube.attributes[key]):
+                    different_value_keys.append(key)
+            common_keys.difference_update(different_value_keys)
+            local_keys.update(different_value_keys)
 
     def is_valid_packspec(p):
         """Only checks that the datatype is valid."""
@@ -2894,7 +3011,12 @@ def is_valid_packspec(p):
                 warnings.warn(msg)
 
         # Add conventions attribute.
-        sman.update_global_attributes(Conventions=conventions)
+        if iris.FUTURE.save_split_attrs:
+            # In the "new way", we just create all the global attributes at once.
+            global_attributes["Conventions"] = conventions
+            sman.update_global_attributes(global_attributes)
+        else:
+            sman.update_global_attributes(Conventions=conventions)
 
     if compute:
         # No more to do, since we used Saver(compute=True).