{2023.06}[GCC/12.3.0] Tools #282

TopRichard · 2024-02-28T07:37:29Z

Tools found on Saga, will try to build it on NESSI:
Lic :
BEDTools/SAMtools --> https://spdx.org/licenses/MIT.html
VCFtools --> https://spdx.org/licenses/LGPL-3.0-only.html

5 out of 19 required modules missing:

* HTSlib/1.18-GCC-12.3.0 (HTSlib-1.18-GCC-12.3.0.eb)
* SAMtools/1.18-GCC-12.3.0 (SAMtools-1.18-GCC-12.3.0.eb)
* VCFtools/0.1.16-GCC-12.3.0 (VCFtools-0.1.16-GCC-12.3.0.eb)
* BamTools/2.5.2-GCC-12.3.0 (BamTools-2.5.2-GCC-12.3.0.eb)
* BEDTools/2.31.0-GCC-12.3.0 (BEDTools-2.31.0-GCC-12.3.0.eb)

nessi-bot · 2024-02-28T07:37:33Z

Instance AWS-MC-NESSI is configured to build:

arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-02-28T07:37:33Z

Instance eX3-NESSI is configured to build:

arch x86_64/amd/zen2 for repo nessi-2023.06-cl
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb10
arch x86_64/amd/zen2 for repo nessi-2023.06-swl-deb11
arch aarch64/generic for repo nessi-2023.06-cl
arch aarch64/generic for repo nessi-2023.06-swl-deb10
arch aarch64/generic for repo nessi-2023.06-swl-deb11

nessi-bot · 2024-02-28T07:37:34Z

Instance Saga-NESSI is configured to build:

arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-cl
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb10
arch x86_64/intel/skylake_avx512 for repo nessi-2023.06-swl-deb11
arch x86_64/intel/broadwell for repo nessi-2023.06-cl
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb10
arch x86_64/intel/broadwell for repo nessi-2023.06-swl-deb11
arch x86_64/generic for repo nessi-2023.06-cl
arch x86_64/generic for repo nessi-2023.06-swl-deb10
arch x86_64/generic for repo nessi-2023.06-swl-deb11

TopRichard · 2024-02-28T07:49:39Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic

nessi-bot · 2024-02-28T07:49:41Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- submitted job 6778, for details & status see {2023.06}[GCC/12.3.0] Tools #282 (comment)

nessi-bot · 2024-02-28T07:49:41Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-02-28T07:49:41Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/generic from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-02-28T07:49:45Z

New job on instance AWS-MC-NESSI for architecture x86_64-generic for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.02/pr_282/6778

date	job status	comment
Feb 28 07:49:44 UTC 2024	submitted	job id `6778` awaits release by job manager
Feb 28 07:50:16 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 28 07:54:18 UTC 2024	running	job `6778` is running
Feb 28 08:07:30 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-6778.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1709107605.tar.gz` size: 40 MiB (42811404 bytes) entries: 970 modules under 2023.06/software/linux/x86_64/generic/modules/all `BamTools/2.5.2-GCC-12.3.0.lua` `BEDTools/2.31.0-GCC-12.3.0.lua` `HTSlib/1.18-GCC-12.3.0.lua` `SAMtools/1.18-GCC-12.3.0.lua` `VCFtools/0.1.16-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/generic/software `BamTools/2.5.2-GCC-12.3.0` `BEDTools/2.31.0-GCC-12.3.0` `HTSlib/1.18-GCC-12.3.0` `SAMtools/1.18-GCC-12.3.0` `VCFtools/0.1.16-GCC-12.3.0` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 28 08:07:30 UTC 2024	test result	(no tests yet)
Feb 28 08:54:37 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1709107605.tar.gz` to S3 bucket succeeded
Feb 28 09:02:41 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-generic-1709107605.tar.gz` downloaded to Stratum-0
Feb 28 09:03:11 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/13 to approve ingest
Feb 28 09:04:55 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-generic-1709107605.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/13
Feb 28 09:08:14 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-generic-1709107605.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/generic/`

TopRichard · 2024-02-28T08:26:41Z

bot: build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell
bot: build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake
bot: build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic

nessi-bot · 2024-02-28T08:26:44Z

Updates by the bot instance AWS-MC-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- submitted job 6779, for details & status see {2023.06}[GCC/12.3.0] Tools #282 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-02-28T08:26:45Z

Updates by the bot instance eX3-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- no jobs were submitted
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- submitted job 138695, for details & status see {2023.06}[GCC/12.3.0] Tools #282 (comment)

nessi-bot · 2024-02-28T08:26:45Z

Updates by the bot instance Saga-NESSI (click for details)

received bot command build inst:AWS-MC-NESSI repo:nessi-2023.06-swl-deb11 arch:zen2 from TopRichard
- expanded format: build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/broadwell from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell
received bot command build inst:Saga-NESSI repo:nessi-2023.06-swl-deb11 arch:x86_64/intel/skylake from TopRichard
- expanded format: build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake
received bot command build inst:eX3 repo:nessi-2023.06-swl-deb11 arch:aarch64/generic from TopRichard
- expanded format: build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic
handling command build instance:AWS-MC-NESSI repository:nessi-2023.06-swl-deb11 architecture:zen2 resulted in:
- no jobs were submitted
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/broadwell resulted in:
- submitted job 10778661, for details & status see {2023.06}[GCC/12.3.0] Tools #282 (comment)
handling command build instance:Saga-NESSI repository:nessi-2023.06-swl-deb11 architecture:x86_64/intel/skylake resulted in:
- submitted job 10778662, for details & status see {2023.06}[GCC/12.3.0] Tools #282 (comment)
handling command build instance:eX3 repository:nessi-2023.06-swl-deb11 architecture:aarch64/generic resulted in:
- no jobs were submitted

nessi-bot · 2024-02-28T08:26:49Z

New job on instance AWS-MC-NESSI for architecture x86_64-amd-zen2 for repository nessi-2023.06-swl-deb11 in job dir /project/def-nessi/SHARED/jobs/2024.02/pr_282/6779

date	job status	comment
Feb 28 08:26:48 UTC 2024	submitted	job id `6779` awaits release by job manager
Feb 28 08:27:34 UTC 2024	released	job awaits launch by Slurm scheduler
Feb 28 08:31:37 UTC 2024	running	job `6779` is running
Feb 28 08:42:47 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-6779.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1709109747.tar.gz` size: 40 MiB (42971611 bytes) entries: 970 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `BamTools/2.5.2-GCC-12.3.0.lua` `BEDTools/2.31.0-GCC-12.3.0.lua` `HTSlib/1.18-GCC-12.3.0.lua` `SAMtools/1.18-GCC-12.3.0.lua` `VCFtools/0.1.16-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `BamTools/2.5.2-GCC-12.3.0` `BEDTools/2.31.0-GCC-12.3.0` `HTSlib/1.18-GCC-12.3.0` `SAMtools/1.18-GCC-12.3.0` `VCFtools/0.1.16-GCC-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 28 08:42:47 UTC 2024	test result	(no tests yet)
Feb 28 08:54:57 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1709109747.tar.gz` to S3 bucket succeeded
Feb 28 09:02:39 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1709109747.tar.gz` downloaded to Stratum-0
Feb 28 09:03:07 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/12 to approve ingest
Feb 28 09:04:52 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1709109747.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/12
Feb 28 09:07:42 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-amd-zen2-1709109747.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/amd/zen2/`

nessi-bot · 2024-02-28T08:26:51Z

New job on instance eX3-NESSI for architecture aarch64-generic for repository nessi-2023.06-swl-deb11 in job dir /home/thomarob/pilot.nessi.no/jobs/2024.02/pr_282/138695

date	job status	comment
Feb 28 08:26:50 AM UTC 2024	submitted	job id `138695` awaits release by job manager
Feb 28 08:27:26 AM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 28 08:28:28 AM UTC 2024	running	job `138695` is running
Feb 28 08:40:41 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-138695.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1709109566.tar.gz` size: 40 MiB (42096212 bytes) entries: 970 modules under 2023.06/software/linux/aarch64/generic/modules/all `BamTools/2.5.2-GCC-12.3.0.lua` `BEDTools/2.31.0-GCC-12.3.0.lua` `HTSlib/1.18-GCC-12.3.0.lua` `SAMtools/1.18-GCC-12.3.0.lua` `VCFtools/0.1.16-GCC-12.3.0.lua` software under 2023.06/software/linux/aarch64/generic/software `BamTools/2.5.2-GCC-12.3.0` `BEDTools/2.31.0-GCC-12.3.0` `HTSlib/1.18-GCC-12.3.0` `SAMtools/1.18-GCC-12.3.0` `VCFtools/0.1.16-GCC-12.3.0` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 28 08:40:41 AM UTC 2024	test result	(no tests yet)
Feb 28 08:59:09 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1709109566.tar.gz` to S3 bucket succeeded
Feb 28 09:02:37 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-aarch64-generic-1709109566.tar.gz` downloaded to Stratum-0
Feb 28 09:03:03 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/11 to approve ingest
Feb 28 09:04:50 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-aarch64-generic-1709109566.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/11
Feb 28 09:06:02 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-aarch64-generic-1709109566.tar.gz` successfully ingested at `2023.06/software/linux/aarch64/generic/`

nessi-bot · 2024-02-28T08:26:52Z

New job on instance Saga-NESSI for architecture x86_64-intel-broadwell for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.02/pr_282/10778661

date	job status	comment
Feb 28 08:26:51 AM UTC 2024	submitted	job id `10778661` awaits release by job manager
Feb 28 08:27:31 AM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 28 08:28:36 AM UTC 2024	running	job `10778661` is running
Feb 28 08:37:56 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10778661.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-broadwell-1709109406.tar.gz` size: 40 MiB (42936038 bytes) entries: 970 modules under 2023.06/software/linux/x86_64/intel/broadwell/modules/all `BamTools/2.5.2-GCC-12.3.0.lua` `BEDTools/2.31.0-GCC-12.3.0.lua` `HTSlib/1.18-GCC-12.3.0.lua` `SAMtools/1.18-GCC-12.3.0.lua` `VCFtools/0.1.16-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/broadwell/software `BamTools/2.5.2-GCC-12.3.0` `BEDTools/2.31.0-GCC-12.3.0` `HTSlib/1.18-GCC-12.3.0` `SAMtools/1.18-GCC-12.3.0` `VCFtools/0.1.16-GCC-12.3.0` other under 2023.06/software/linux/x86_64/intel/broadwell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 28 08:37:56 AM UTC 2024	test result	(no tests yet)
Feb 28 08:55:08 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-broadwell-1709109406.tar.gz` to S3 bucket succeeded
Feb 28 09:02:43 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1709109406.tar.gz` downloaded to Stratum-0
Feb 28 09:03:15 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/14 to approve ingest
Feb 28 09:04:57 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1709109406.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/14
Feb 28 09:08:53 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-broadwell-1709109406.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/broadwell/`

nessi-bot · 2024-02-28T08:26:58Z

New job on instance Saga-NESSI for architecture x86_64-intel-skylake_avx512 for repository nessi-2023.06-swl-deb11 in job dir /cluster/projects/nn9992k/pilot.nessi.no/jobs/2024.02/pr_282/10778662

date	job status	comment
Feb 28 08:26:57 AM UTC 2024	submitted	job id `10778662` awaits release by job manager
Feb 28 08:27:34 AM UTC 2024	released	job awaits launch by Slurm scheduler
Feb 28 08:28:38 AM UTC 2024	running	job `10778662` is running
Feb 28 08:37:58 AM UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-10778662.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1709109405.tar.gz` size: 40 MiB (42887793 bytes) entries: 970 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `BamTools/2.5.2-GCC-12.3.0.lua` `BEDTools/2.31.0-GCC-12.3.0.lua` `HTSlib/1.18-GCC-12.3.0.lua` `SAMtools/1.18-GCC-12.3.0.lua` `VCFtools/0.1.16-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `BamTools/2.5.2-GCC-12.3.0` `BEDTools/2.31.0-GCC-12.3.0` `HTSlib/1.18-GCC-12.3.0` `SAMtools/1.18-GCC-12.3.0` `VCFtools/0.1.16-GCC-12.3.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Feb 28 08:37:58 AM UTC 2024	test result	(no tests yet)
Feb 28 08:54:45 AM UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1709109405.tar.gz` to S3 bucket succeeded
Feb 28 09:02:46 AM UTC 2024	staged	tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1709109405.tar.gz` downloaded to Stratum-0
Feb 28 09:03:19 AM UTC 2024	pr_opened	merge PR https://github.com/NorESSI/2024-staging/pull/15 to approve ingest
Feb 28 09:04:59 AM UTC 2024	approved	👍 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1709109405.tar.gz` approved, see PR https://github.com/NorESSI/2024-staging/pull/15
Feb 28 09:09:43 AM UTC 2024	ingested	🎉 tarball `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1709109405.tar.gz` successfully ingested at `2023.06/software/linux/x86_64/intel/skylake_avx512/`

TopRichard · 2024-02-28T08:54:44Z

Checklist before starting deployment (setting bot:deploy label):

Check whether builds for all required architectures succeed (SUCCESS message + reasonably sized tarball)
Check if the PR is up-to-date with the target branch nessi.no-2023.06 in the repository (if not what are the differences)
Assess if all requested changes are sound (checking files changed on github.com)
Verify that all easyconfig/s being built are included with the EB version used (if not why not)
[] Review changes (if any) needed to get the build(s) succeed (common changes for all architectures, changes for a single architecture, changes because of build environment specifics, etc.)

TopRichard · 2024-02-28T12:44:43Z

Target architectures

x86_64-intel-broadwell
x86_64-intel-skylake_avx512
x86_64-amd-zen2
x86_64-generic
aarch64-generic

Checklist for deployment/ingestion

Check if the SPDX license identifier is provided
at least one tarball for each architecture has been uploaded
at least one tarball for each architecture has been staged
for each architecture one and only one tarball has been approved
for each architecture one and only one tarball was ingested
[] encountered issues in the ingestion, likely related to troubles interacting with GitHub via PyGithub …
[] all tests in the CI for the ingested tarballs have succeeded (rerun failed tests ~ 10 mins after last ingest)
- Some test are filing but they are independent of the package being built
has the package become available via CernVM-FS for all architectures ingested (for lmod cache updates pay attention to timestamp of files)

command & log

command

cd /cvmfs/pilot.nessi.no/versions/2023.06/software/linux ; 
ls -l \
      x86_64/{generic,amd/zen2,intel/[bsc]*}/{software,modules/all}/{BEDTools/2.31.0-GCC-12.3.*,SAMtools/1.18-GCC-12.3.*,VCFtools/0.1.16-GCC-12.3.*} \
      aarch64/generic/{software,modules/all}/{BEDTools/2.31.0-GCC-12.3.*,SAMtools/1.18-GCC-12.3.*,VCFtools/0.1.16-GCC-12.3.*}

log (note, output includes -bare modules)

-rw-r--r-- 1 cvmfs cvmfs 1411 Feb 28 08:35 aarch64/generic/modules/all/BEDTools/2.31.0-GCC-12.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1389 Feb 28 08:33 aarch64/generic/modules/all/SAMtools/1.18-GCC-12.3.0.lua
-rw-r--r-- 1 cvmfs cvmfs 1440 Feb 28 08:34 aarch64/generic/modules/all/VCFtools/0.1.16-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1411 Feb 28 08:40 x86_64/amd/zen2/modules/all/BEDTools/2.31.0-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1389 Feb 28 08:37 x86_64/amd/zen2/modules/all/SAMtools/1.18-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1440 Feb 28 08:38 x86_64/amd/zen2/modules/all/VCFtools/0.1.16-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1410 Feb 28 08:04 x86_64/generic/modules/all/BEDTools/2.31.0-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1388 Feb 28 08:01 x86_64/generic/modules/all/SAMtools/1.18-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1439 Feb 28 08:02 x86_64/generic/modules/all/VCFtools/0.1.16-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1418 Feb 28 08:33 x86_64/intel/broadwell/modules/all/BEDTools/2.31.0-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1396 Feb 28 08:31 x86_64/intel/broadwell/modules/all/SAMtools/1.18-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1447 Feb 28 08:32 x86_64/intel/broadwell/modules/all/VCFtools/0.1.16-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1423 Feb 28 08:33 x86_64/intel/skylake_avx512/modules/all/BEDTools/2.31.0-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1401 Feb 28 08:30 x86_64/intel/skylake_avx512/modules/all/SAMtools/1.18-GCC-12.3.0.lua
-rw-rw-r-- 1 cvmfs cvmfs 1452 Feb 28 08:32 x86_64/intel/skylake_avx512/modules/all/VCFtools/0.1.16-GCC-12.3.0.lua

aarch64/generic/software/BEDTools/2.31.0-GCC-12.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Feb 28 08:35 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Apr 28  2023 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Feb 28 08:35 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Feb 28 08:35 test

aarch64/generic/software/SAMtools/1.18-GCC-12.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:33 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:33 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Feb 28 08:33 include
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:33 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:33 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:33 share

aarch64/generic/software/VCFtools/0.1.16-GCC-12.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:34 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:34 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:34 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:34 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:34 share

x86_64/amd/zen2/software/BEDTools/2.31.0-GCC-12.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Feb 28 08:40 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Apr 28  2023 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Feb 28 08:40 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Feb 28 08:40 test

x86_64/amd/zen2/software/SAMtools/1.18-GCC-12.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:37 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:37 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Feb 28 08:37 include
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:37 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:37 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:37 share

x86_64/amd/zen2/software/VCFtools/0.1.16-GCC-12.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:38 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:38 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:38 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:38 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:38 share

x86_64/generic/software/BEDTools/2.31.0-GCC-12.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Feb 28 08:04 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Apr 28  2023 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Feb 28 08:04 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Feb 28 08:04 test

x86_64/generic/software/SAMtools/1.18-GCC-12.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:01 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:01 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Feb 28 08:01 include
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:01 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:01 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:01 share

x86_64/generic/software/VCFtools/0.1.16-GCC-12.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:02 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:02 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:02 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:02 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:02 share

x86_64/intel/broadwell/software/BEDTools/2.31.0-GCC-12.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Feb 28 08:33 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Apr 28  2023 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Feb 28 08:33 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Feb 28 08:33 test

x86_64/intel/broadwell/software/SAMtools/1.18-GCC-12.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:31 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:31 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Feb 28 08:31 include
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:31 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:31 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:31 share

x86_64/intel/broadwell/software/VCFtools/0.1.16-GCC-12.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:32 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:32 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:32 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:32 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:32 share

x86_64/intel/skylake_avx512/software/BEDTools/2.31.0-GCC-12.3.0:
total 32
dr-xr-xr-x  2 cvmfs cvmfs 4096 Feb 28 08:33 bin
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 data
dr-xr-xr-x  6 cvmfs cvmfs 4096 Apr 28  2023 docs
dr-xr-xr-x  3 cvmfs cvmfs 4096 Feb 28 08:33 easybuild
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 genomes
dr-xr-xr-x  2 cvmfs cvmfs 4096 Apr 28  2023 scripts
dr-xr-xr-x 34 cvmfs cvmfs 4096 Feb 28 08:33 test

x86_64/intel/skylake_avx512/software/SAMtools/1.18-GCC-12.3.0:
total 23
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:30 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:30 easybuild
dr-xr-xr-x 4 cvmfs cvmfs 4096 Feb 28 08:30 include
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:30 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:30 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:30 share

x86_64/intel/skylake_avx512/software/VCFtools/0.1.16-GCC-12.3.0:
total 19
dr-xr-xr-x 2 cvmfs cvmfs 4096 Feb 28 08:32 bin
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:32 easybuild
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:32 lib
lrwxrwxrwx 1 cvmfs cvmfs    3 Feb 28 08:32 lib64 -> lib
dr-xr-xr-x 3 cvmfs cvmfs 4096 Feb 28 08:32 share

justadejavu

Lgtm

Richard Top added 3 commits February 27, 2024 19:09

{2023.06}[GCC/12.3.0] Tools

ed76ecc

{2023.06}[GCC/12.3.0] Tools

a7e0560

sync local branch with remote

011dc11

TopRichard added the NESSI/2023.06 label Feb 28, 2024

TopRichard added the bot:deploy label Feb 28, 2024

TopRichard added the ingested label Feb 28, 2024

TopRichard requested a review from justadejavu February 28, 2024 12:45

justadejavu approved these changes Feb 28, 2024

View reviewed changes

TopRichard merged commit df21e13 into NorESSI:nessi.no-2023.06 Feb 28, 2024

{2023.06}[GCC/12.3.0] Tools #282

{2023.06}[GCC/12.3.0] Tools #282

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