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{2023.06}[foss/2023a] AlphaFold 2.3.2 (CPU-only) #785

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@boegel boegel commented Oct 12, 2024 •
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If these two PRs can be deployed & merged first, then this PR could also be built for A64FX:

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{2023.06}[foss/2023a] Kalign 3.4.0, absl-py 2.1.0, dm-tree 0.1.8, HH-…
b1500c7 
…suite 3.3.0, pytest-xdist 3.3.1, tensorstore 0.1.65 (AlphaFold dependencies)
@boegel boegel added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Oct 12, 2024
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Instance eessi-bot-mc-aws is configured to build for:

  • architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
  • repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

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Instance boegel-bot-deucalion is configured to build for:

  • architectures: aarch64/a64fx
  • repositories: eessi.io-2023.06-software

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eessi-bot bot commented Oct 12, 2024

Instance eessi-bot-mc-azure is configured to build for:

  • architectures: x86_64/amd/zen4
  • repositories: eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software, eessi.io-2023.06-compat

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boegel commented Oct 12, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4
bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

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boegel commented Oct 12, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

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  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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boegel commented Oct 12, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

    • no jobs were submitted

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@boegel boegel changed the title {2023.06}[foss/2023a] Kalign 3.4.0, absl-py 2.1.0, dm-tree 0.1.8, HH-suite 3.3.0, pytest-xdist 3.3.1, tensorstore 0.1.65 (AlphaFold dependencies) {2023.06}[foss/2023a] AlphaFold 2.3.2 (CPU-only) Oct 12, 2024
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boegel commented Oct 12, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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New job on instance eessi-bot-mc-azure for CPU micro-architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_785/1493

date job status comment
Oct 14 15:46:45 UTC 2024 submitted job id 1493 awaits release by job manager
Oct 14 15:46:58 UTC 2024 released job awaits launch by Slurm scheduler
Oct 14 15:52:02 UTC 2024 running job 1493 is running
Oct 14 16:01:19 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-1493.out
❌ found message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen4-1728921149.tar.gzsize: 0 MiB (742 bytes)
entries: 1
modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all
no module files in tarball
software under 2023.06/software/linux/x86_64/amd/zen4/software
no software packages in tarball
other under 2023.06/software/linux/x86_64/amd/zen4
2023.06/init/minimal_eessi_env
Oct 14 16:01:19 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 1795.515 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 1786.482 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.52 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.51 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.12 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 12.13 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.3 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.3 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 48800.08 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 49451.34 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-1493.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_785/23210

date job status comment
Oct 14 15:46:46 UTC 2024 submitted job id 23210 awaits release by job manager
Oct 14 15:47:08 UTC 2024 released job awaits launch by Slurm scheduler
Oct 14 15:54:11 UTC 2024 running job 23210 is running
Oct 14 16:02:23 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-23210.out
❌ found message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1728921328.tar.gzsize: 0 MiB (742 bytes)
entries: 1
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
no module files in tarball
software under 2023.06/software/linux/aarch64/neoverse_v1/software
no software packages in tarball
other under 2023.06/software/linux/aarch64/neoverse_v1
2023.06/init/minimal_eessi_env
Oct 14 16:02:23 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 985.721 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 944.461 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.4 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.09 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 4.24 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 5.13 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.38 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.36 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 28409.44 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 27898.98 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-23210.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@bedroge
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bedroge commented Oct 15, 2024 

ERROR: Failed to import easyblock easybuild.easyblocks.generic.easyblock_specific from /tmp/eb-8jhgh9v7/eb-9n3khefk/included-easyblocks-hrubc4ot/easybuild/easyblocks/generic: No module named 'test.easyblocks'

Looks like it cannot use the files from easybuilders/easybuild-easyblocks#3486. I suspect it's because of the test/easyblocks subdirectory/module, which doesn't have an __init__.py when it's downloaded from the PR to a temporary dir?

@boegel
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boegel commented Oct 16, 2024 

ERROR: Failed to import easyblock easybuild.easyblocks.generic.easyblock_specific from /tmp/eb-8jhgh9v7/eb-9n3khefk/included-easyblocks-hrubc4ot/easybuild/easyblocks/generic: No module named 'test.easyblocks'

Looks like it cannot use the files from easybuilders/easybuild-easyblocks#3486. I suspect it's because of the test/easyblocks subdirectory/module, which doesn't have an __init__.py when it's downloaded from the PR to a temporary dir?

That's essentially a bug in framework, --include-easyblocks-from-* should only pick up actual easyblocks under easybuild/easyblocks, or at the very least ignore stuff under test/easyblocks.

I'll split up easybuilders/easybuild-easyblocks#3486 in two commits, by creating a separate commit for the tests included in there...

@boegel boegel force-pushed the 2023.06-software.eessi.io_AlphaFold-deps branch from 64af4cb to 19d12fc Compare October 16, 2024 21:39
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boegel commented Oct 16, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

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Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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New job on instance boegel-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.10/pr_785/171320

date job status comment
Oct 16 21:41:27 UTC 2024 submitted job id 171320 awaits release by job manager
Oct 16 21:41:32 UTC 2024 released job awaits launch by Slurm scheduler
Oct 16 21:42:34 UTC 2024 running job 171320 is running
Oct 17 02:55:18 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-171320.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1729128722.tar.gzsize: 51 MiB (54215772 bytes)
entries: 1284
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
absl-py/2.1.0-GCCcore-12.3.0.lua
Bazel/6.3.1-GCCcore-12.3.0.lua
flatbuffers-python/23.5.26-GCCcore-12.3.0.lua
ml_dtypes/0.3.2-gfbf-2023a.lua
pytest/7.4.2-GCCcore-12.3.0.lua
pytest-xdist/3.3.1-GCCcore-12.3.0.lua
Zip/3.0-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
absl-py/2.1.0-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
ml_dtypes/0.3.2-gfbf-2023a
pytest/7.4.2-GCCcore-12.3.0
pytest-xdist/3.3.1-GCCcore-12.3.0
Zip/3.0-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
no other files in tarball
Oct 17 02:55:18 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-171320.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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New job on instance eessi-bot-mc-azure for CPU micro-architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_785/1528

date job status comment
Oct 16 21:41:27 UTC 2024 submitted job id 1528 awaits release by job manager
Oct 16 21:42:14 UTC 2024 released job awaits launch by Slurm scheduler
Oct 16 21:46:18 UTC 2024 running job 1528 is running
Oct 16 22:51:18 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-1528.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen4-1729118200.tar.gzsize: 169 MiB (178050905 bytes)
entries: 5116
modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all
AlphaFold/2.3.2-foss-2023a.lua
Blosc/1.21.5-GCCcore-12.3.0.lua
HH-suite/3.3.0-gompi-2023a.lua
Kalign/3.4.0-GCCcore-12.3.0.lua
OpenMM/8.0.0-foss-2023a.lua
Optax/0.2.2-gfbf-2023a.lua
absl-py/2.1.0-GCCcore-12.3.0.lua
dm-haiku/0.0.12-foss-2023a.lua
dm-tree/0.1.8-GCCcore-12.3.0.lua
jax/0.4.25-gfbf-2023a.lua
ml_dtypes/0.3.2-gfbf-2023a.lua
pytest-xdist/3.3.1-GCCcore-12.3.0.lua
pytest/7.4.2-GCCcore-12.3.0.lua
tensorstore/0.1.65-foss-2023a.lua
software under 2023.06/software/linux/x86_64/amd/zen4/software
AlphaFold/2.3.2-foss-2023a
Blosc/1.21.5-GCCcore-12.3.0
HH-suite/3.3.0-gompi-2023a
Kalign/3.4.0-GCCcore-12.3.0
OpenMM/8.0.0-foss-2023a
Optax/0.2.2-gfbf-2023a
absl-py/2.1.0-GCCcore-12.3.0
dm-haiku/0.0.12-foss-2023a
dm-tree/0.1.8-GCCcore-12.3.0
jax/0.4.25-gfbf-2023a
ml_dtypes/0.3.2-gfbf-2023a
pytest-xdist/3.3.1-GCCcore-12.3.0
pytest/7.4.2-GCCcore-12.3.0
tensorstore/0.1.65-foss-2023a
other under 2023.06/software/linux/x86_64/amd/zen4
no other files in tarball
Oct 16 22:51:18 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 1805.836 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:x86-64-amd-zen4-node+default
P: perf: 460.877 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.84 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 3.38 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.58 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 10.74 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.29 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:x86-64-amd-zen4-node+default
P: latency: 0.3 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 48242.0 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:x86-64-amd-zen4-node+default
P: bandwidth: 47207.43 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-1528.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_785/23627

date job status comment
Oct 16 21:41:28 UTC 2024 submitted job id 23627 awaits release by job manager
Oct 16 21:41:49 UTC 2024 released job awaits launch by Slurm scheduler
Oct 16 21:46:52 UTC 2024 running job 23627 is running
Oct 16 22:34:02 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-23627.out
❌ found message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Oct 16 22:34:02 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 983.455 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 957.016 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.01 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 2.91 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 4.5 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 4.52 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.39 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.39 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 36473.29 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 35894.33 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-23627.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@boegel
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boegel commented Oct 17, 2024

On neoverse_v1, the build failed due to a crash of CernVM-FS:

cvmfs2: /root/deb/wd_src/cvmfs/util/smalloc.h:108: void* smmap(size_t): Assertion `(mem != MAP_FAILED) && "Out Of Memory"' failed.
terminate called after throwing an instance of 'ECvmfsException'
  what():  PANIC: /root/deb/wd_src/cvmfs/monitor.cc : 587
watchdog disappeared, aborting

I think this happened during the build of jax, but it's not immediately obvious from the build log.

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boegel commented Oct 17, 2024

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/a64fx
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

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eessi-bot bot commented Oct 17, 2024 •
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

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eessi-build-deploy-bot-deucalion bot commented Oct 17, 2024 •
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Updates by the bot instance boegel-bot-deucalion (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Oct 17, 2024 •
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Updates by the bot instance eessi-bot-mc-azure (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/a64fx from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/a64fx

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from boegel

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/a64fx resulted in:

    • no jobs were submitted

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

    • no jobs were submitted

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eessi-bot bot commented Oct 17, 2024 •
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New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_785/23804

date job status comment
Oct 17 06:32:55 UTC 2024 submitted job id 23804 awaits release by job manager
Oct 17 06:33:45 UTC 2024 released job awaits launch by Slurm scheduler
Oct 17 06:40:54 UTC 2024 running job 23804 is running
Oct 17 13:22:59 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-23804.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
No artefacts were created or found.
Oct 17 13:22:59 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
Failed for unknown reason
Details
✅ job output file slurm-23804.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-build-deploy-bot-deucalion bot commented Oct 17, 2024 •
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New job on instance boegel-bot-deucalion for CPU micro-architecture aarch64-a64fx for repository eessi.io-2023.06-software in job dir /home/kehoste/project_dir/bot/jobs/2024.10/pr_785/171973

date job status comment
Oct 17 06:32:56 UTC 2024 submitted job id 171973 awaits release by job manager
Oct 17 06:33:14 UTC 2024 released job awaits launch by Slurm scheduler
Oct 17 06:34:17 UTC 2024 running job 171973 is running
Oct 17 10:26:58 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-171973.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-a64fx-1729155849.tar.gzsize: 51 MiB (53788980 bytes)
entries: 1285
modules under 2023.06/software/linux/aarch64/a64fx/modules/all
absl-py/2.1.0-GCCcore-12.3.0.lua
Bazel/6.3.1-GCCcore-12.3.0.lua
flatbuffers-python/23.5.26-GCCcore-12.3.0.lua
ml_dtypes/0.3.2-gfbf-2023a.lua
pytest/7.4.2-GCCcore-12.3.0.lua
pytest-xdist/3.3.1-GCCcore-12.3.0.lua
Zip/3.0-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/a64fx/software
absl-py/2.1.0-GCCcore-12.3.0
Bazel/6.3.1-GCCcore-12.3.0
flatbuffers-python/23.5.26-GCCcore-12.3.0
ml_dtypes/0.3.2-gfbf-2023a
pytest/7.4.2-GCCcore-12.3.0
pytest-xdist/3.3.1-GCCcore-12.3.0
Zip/3.0-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/a64fx
2023.06/init/easybuild/eb_hooks.py
Oct 17 10:26:58 UTC 2024 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-171973.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-bot bot commented Oct 17, 2024 •
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New job on instance eessi-bot-mc-aws for CPU micro-architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.10/pr_785/23805

date job status comment
Oct 17 06:33:00 UTC 2024 submitted job id 23805 awaits release by job manager
Oct 17 06:33:43 UTC 2024 released job awaits launch by Slurm scheduler
Oct 17 06:38:48 UTC 2024 running job 23805 is running
Oct 17 07:55:28 UTC 2024 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-23805.out
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1729150674.tar.gzsize: 6 MiB (6552951 bytes)
entries: 1192
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
absl-py/2.1.0-GCCcore-12.3.0.lua
ml_dtypes/0.3.2-gfbf-2023a.lua
pytest/7.4.2-GCCcore-12.3.0.lua
pytest-xdist/3.3.1-GCCcore-12.3.0.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
absl-py/2.1.0-GCCcore-12.3.0
ml_dtypes/0.3.2-gfbf-2023a
pytest/7.4.2-GCCcore-12.3.0
pytest-xdist/3.3.1-GCCcore-12.3.0
other under 2023.06/software/linux/aarch64/neoverse_v1
2023.06/init/easybuild/eb_hooks.py
Oct 17 07:55:28 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ OK ] ( 1/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos /aeb2d9df @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 984.37 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 2/10) EESSI_LAMMPS_lj %scale=1_node %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos /04ff9ece @BotBuildTests:aarch64-neoverse-v1-node+default
P: perf: 951.47 timesteps/s (r:0, l:None, u:None)
[ OK ] ( 3/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /31ac6ab9 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.33 us (r:0, l:None, u:None)
[ OK ] ( 4/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_allreduce %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /f3be40a2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 3.01 us (r:0, l:None, u:None)
[ OK ] ( 5/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /10e66fba @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 4.61 us (r:0, l:None, u:None)
[ OK ] ( 6/10) EESSI_OSU_Micro_Benchmarks_coll %benchmark_info=mpi.collective.osu_alltoall %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /5be57ae7 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 8.44 us (r:0, l:None, u:None)
[ OK ] ( 7/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /c8c9aff5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.39 us (r:0, l:None, u:None)
[ OK ] ( 8/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_latency %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /9795e491 @BotBuildTests:aarch64-neoverse-v1-node+default
P: latency: 0.38 us (r:0, l:None, u:None)
[ OK ] ( 9/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %device_type=cpu /48da21c5 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 28769.22 MB/s (r:0, l:None, u:None)
[ OK ] (10/10) EESSI_OSU_Micro_Benchmarks_pt2pt %benchmark_info=mpi.pt2pt.osu_bw %scale=1_node %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %device_type=cpu /1b8c1ca2 @BotBuildTests:aarch64-neoverse-v1-node+default
P: bandwidth: 29016.92 MB/s (r:0, l:None, u:None)
[ PASSED ] Ran 10/10 test case(s) from 10 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-23805.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@laraPPr
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laraPPr commented Jun 27, 2025 •
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@boegel Can you split up this pr and target the main branch.

@laraPPr
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laraPPr commented Jun 27, 2025

EESSI/software-layer-scripts#25

@laraPPr
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laraPPr commented Jun 27, 2025

Closing in favour of this pr:

@laraPPr laraPPr closed this Jun 27, 2025
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@boegel @bedroge @laraPPr