{2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634

TopRichard · 2024-07-05T12:26:38Z

missing packages :

BWA-0.7.17-GCCcore-12.3.0.
CapnProto-1.0.1-GCCcore-12.3.0
DendroPy-4.6.1-GCCcore-12.3.0
DIAMOND-2.1.8-GCC-12.3.0 
FastME-2.1.6.3-GCC-12.3.0
fastp-0.23.4-GCC-12.3.0
HMMER-3.4-gompi-2023a
IQ-TREE-2.3.5-gompi-2023a
KronaTools-2.8.1-GCCcore-12.3.0
LSD2-2.4.1-GCCcore-12.3.0
MAFFT-7.520-GCC-12.3.0-with-extensions
ncbi-vdb-3.0.10-gompi-2023a

eessi-bot · 2024-07-05T12:26:42Z

Instance eessi-bot-mc-aws is configured to build for:

architectures: x86_64/generic, x86_64/intel/haswell, x86_64/intel/skylake_avx512, x86_64/amd/zen2, x86_64/amd/zen3, aarch64/generic, aarch64/neoverse_n1, aarch64/neoverse_v1
repositories: eessi.io-2023.06-compat, eessi-hpc.org-2023.06-software, eessi-hpc.org-2023.06-compat, eessi.io-2023.06-software

eessi-build-deploy-bot-deucalion · 2024-07-05T12:26:42Z

Instance boegel-bot-deucalion is configured to build for:

architectures: aarch64/a64fx
repositories: eessi.io-2023.06-software

eessi-bot · 2024-07-05T12:26:43Z

Instance eessi-bot-mc-azure is configured to build for:

architectures: x86_64/amd/zen4
repositories: eessi-hpc.org-2023.06-compat, eessi-hpc.org-2023.06-software, eessi.io-2023.06-software, eessi.io-2023.06-compat

TopRichard · 2024-07-05T12:27:07Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-07-05T12:27:09Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 13876, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 13877, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 13878, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 13879, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 13880, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 13881, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 13882, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 13883, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)

eessi-build-deploy-bot-deucalion · 2024-07-05T12:27:09Z

Updates by the bot instance boegel-bot-deucalion (click for details)

account TopRichard has NO permission to send commands to the bot

eessi-bot · 2024-07-05T12:27:10Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

account TopRichard has NO permission to send commands to the bot

eessi-bot · 2024-07-05T12:27:13Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13876

date	job status	comment
Jul 05 12:27:12 UTC 2024	submitted	job id `13876` awaits release by job manager
Jul 05 12:27:19 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:33:37 UTC 2024	running	job `13876` is running
Jul 05 12:58:16 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13876.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 12:58:16 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13876.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:17Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13877

date	job status	comment
Jul 05 12:27:16 UTC 2024	submitted	job id `13877` awaits release by job manager
Jul 05 12:27:21 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:33:39 UTC 2024	running	job `13877` is running
Jul 05 12:58:18 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13877.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 12:58:18 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13877.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:20Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13878

date	job status	comment
Jul 05 12:27:20 UTC 2024	submitted	job id `13878` awaits release by job manager
Jul 05 12:28:31 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:35:54 UTC 2024	running	job `13878` is running
Jul 05 12:58:20 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13878.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 12:58:20 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13878.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:24Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13879

date	job status	comment
Jul 05 12:27:23 UTC 2024	submitted	job id `13879` awaits release by job manager
Jul 05 12:28:28 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:35:48 UTC 2024	running	job `13879` is running
Jul 05 13:01:31 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13879.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:01:31 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13879.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:28Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13880

date	job status	comment
Jul 05 12:27:27 UTC 2024	submitted	job id `13880` awaits release by job manager
Jul 05 12:28:30 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:35:50 UTC 2024	running	job `13880` is running
Jul 05 12:57:11 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13880.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 12:57:11 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13880.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:31Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13881

date	job status	comment
Jul 05 12:27:31 UTC 2024	submitted	job id `13881` awaits release by job manager
Jul 05 12:28:23 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:33:33 UTC 2024	running	job `13881` is running
Jul 05 13:11:53 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13881.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:11:53 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13881.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:35Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13882

date	job status	comment
Jul 05 12:27:34 UTC 2024	submitted	job id `13882` awaits release by job manager
Jul 05 12:28:25 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:34:42 UTC 2024	running	job `13882` is running
Jul 05 13:11:55 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13882.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:11:55 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13882.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T12:27:39Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13883

date	job status	comment
Jul 05 12:27:38 UTC 2024	submitted	job id `13883` awaits release by job manager
Jul 05 12:28:26 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 12:33:35 UTC 2024	running	job `13883` is running
Jul 05 13:01:29 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13883.out` ❌ found message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:01:29 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13883.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023a.yml

…23a.yml Co-authored-by: Bob Dröge <[email protected]>

TopRichard · 2024-07-05T13:11:39Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-07-05T13:11:42Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from TopRichard
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 13884, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 13885, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 13886, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 13887, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 13888, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 13889, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 13890, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 13891, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)

eessi-build-deploy-bot-deucalion · 2024-07-05T13:11:42Z

Updates by the bot instance boegel-bot-deucalion (click for details)

account TopRichard has NO permission to send commands to the bot

eessi-bot · 2024-07-05T13:11:43Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

account TopRichard has NO permission to send commands to the bot

eessi-bot · 2024-07-05T13:11:46Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13884

date	job status	comment
Jul 05 13:11:45 UTC 2024	submitted	job id `13884` awaits release by job manager
Jul 05 13:11:50 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:13:08 UTC 2024	running	job `13884` is running
Jul 05 13:39:02 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13884.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:39:02 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13884.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T13:11:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13885

date	job status	comment
Jul 05 13:11:49 UTC 2024	submitted	job id `13885` awaits release by job manager
Jul 05 13:11:52 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:13:10 UTC 2024	running	job `13885` is running
Jul 05 13:37:57 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13885.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:37:57 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13885.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T13:11:53Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13886

date	job status	comment
Jul 05 13:11:53 UTC 2024	submitted	job id `13886` awaits release by job manager
Jul 05 13:13:07 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:14:22 UTC 2024	running	job `13886` is running
Jul 05 13:36:52 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13886.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:36:52 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13886.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T13:11:57Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13887

date	job status	comment
Jul 05 13:11:56 UTC 2024	submitted	job id `13887` awaits release by job manager
Jul 05 13:13:03 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:14:17 UTC 2024	running	job `13887` is running
Jul 05 13:40:06 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13887.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:40:06 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13887.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T13:12:01Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13888

date	job status	comment
Jul 05 13:12:00 UTC 2024	submitted	job id `13888` awaits release by job manager
Jul 05 13:13:05 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:14:19 UTC 2024	running	job `13888` is running
Jul 05 13:35:45 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13888.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:35:45 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13888.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T13:12:07Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13889

date	job status	comment
Jul 05 13:12:06 UTC 2024	submitted	job id `13889` awaits release by job manager
Jul 05 13:12:57 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:14:12 UTC 2024	running	job `13889` is running
Jul 05 13:51:40 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13889.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:51:40 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13889.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T13:12:11Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13890

date	job status	comment
Jul 05 13:12:10 UTC 2024	submitted	job id `13890` awaits release by job manager
Jul 05 13:12:59 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 13:14:14 UTC 2024	running	job `13890` is running
Jul 05 13:52:56 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13890.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 13:52:56 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13890.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T16:24:36Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13906

date	job status	comment
Jul 05 16:24:35 UTC 2024	submitted	job id `13906` awaits release by job manager
Jul 05 16:25:06 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 16:30:26 UTC 2024	running	job `13906` is running
Jul 05 17:08:49 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13906.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 17:08:49 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13906.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T16:24:39Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13907

date	job status	comment
Jul 05 16:24:39 UTC 2024	submitted	job id `13907` awaits release by job manager
Jul 05 16:25:08 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 16:30:30 UTC 2024	running	job `13907` is running
Jul 05 16:58:28 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13907.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Jul 05 16:58:28 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13907.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…ges-gompi/2023a

bedroge · 2024-07-05T20:03:29Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

eessi-bot · 2024-07-05T20:03:31Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 13908, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)

eessi-bot · 2024-07-05T20:03:32Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted

eessi-bot · 2024-07-05T20:03:35Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13908

date	job status	comment
Jul 05 20:03:34 UTC 2024	submitted	job id `13908` awaits release by job manager
Jul 05 20:04:15 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 20:09:18 UTC 2024	running	job `13908` is running
Jul 05 20:35:50 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13908.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1720210946.tar.gz` size: 46 MiB (49058684 bytes) entries: 1493 modules under 2023.06/software/linux/x86_64/generic/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Jul 05 20:35:50 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13908.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…-layer into eessi-2023.06-Bio-packages-gompi/2023a

bedroge · 2024-07-05T21:02:47Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-07-05T21:02:49Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 13909, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 13910, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 13911, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 13912, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 13913, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 13914, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 13915, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 13916, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)

eessi-bot · 2024-07-05T21:02:50Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen4 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen4 resulted in:
- submitted job 140, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- no jobs were submitted
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- no jobs were submitted

eessi-bot · 2024-07-05T21:02:53Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13909

date	job status	comment
Jul 05 21:02:52 UTC 2024	submitted	job id `13909` awaits release by job manager
Jul 05 21:02:55 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:08:17 UTC 2024	running	job `13909` is running
Jul 05 21:45:32 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13909.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1720214485.tar.gz` size: 44 MiB (47029036 bytes) entries: 1493 modules under 2023.06/software/linux/aarch64/generic/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/generic/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Jul 05 21:45:32 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13909.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:19:57 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1720214485.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:02:56Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13910

date	job status	comment
Jul 05 21:02:56 UTC 2024	submitted	job id `13910` awaits release by job manager
Jul 05 21:03:57 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:10:25 UTC 2024	running	job `13910` is running
Jul 05 21:48:36 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13910.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1720214642.tar.gz` size: 44 MiB (47040327 bytes) entries: 1493 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Jul 05 21:48:36 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13910.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:20:16 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1720214642.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:02:59Z

New job on instance eessi-bot-mc-azure for architecture x86_64-amd-zen4 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/140

date	job status	comment
Jul 05 21:02:58 UTC 2024	submitted	job id `140` awaits release by job manager
Jul 05 21:03:57 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:08:00 UTC 2024	running	job `140` is running
Jul 05 21:21:22 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-140.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen4-1720214391.tar.gz` size: 52 MiB (54612731 bytes) entries: 1570 modules under 2023.06/software/linux/x86_64/amd/zen4/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DIAMOND/2.1.8-GCC-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `FastME/2.1.6.3-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `ISA-L/2.30.0-GCCcore-12.3.0.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `fastp/0.23.4-GCC-12.3.0.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen4/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DIAMOND/2.1.8-GCC-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `FastME/2.1.6.3-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `ISA-L/2.30.0-GCCcore-12.3.0` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `fastp/0.23.4-GCC-12.3.0` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/amd/zen4 no other files in tarball
Jul 05 21:21:22 UTC 2024	test result	😢 FAILURE (click triangle for details) Reason EESSI test suite was not run, test step itself failed to execute. Details ✅ job output file `slurm-140.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:19:37 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen4-1720214391.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:03:00Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13911

date	job status	comment
Jul 05 21:02:59 UTC 2024	submitted	job id `13911` awaits release by job manager
Jul 05 21:03:59 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:10:27 UTC 2024	running	job `13911` is running
Jul 05 21:39:17 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13911.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1720214439.tar.gz` size: 45 MiB (47236604 bytes) entries: 1493 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Jul 05 21:39:17 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13911.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:20:36 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1720214439.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:03:04Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13912

date	job status	comment
Jul 05 21:03:03 UTC 2024	submitted	job id `13912` awaits release by job manager
Jul 05 21:04:06 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:05:12 UTC 2024	running	job `13912` is running
Jul 05 21:30:27 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13912.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1720214236.tar.gz` size: 46 MiB (49061084 bytes) entries: 1493 modules under 2023.06/software/linux/x86_64/generic/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/generic/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Jul 05 21:30:27 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13912.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:19:37 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1720214236.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:03:07Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13913

date	job status	comment
Jul 05 21:03:07 UTC 2024	submitted	job id `13913` awaits release by job manager
Jul 05 21:04:01 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:12:39 UTC 2024	running	job `13913` is running
Jul 05 21:30:25 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-13913.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1720214271.tar.gz` size: 10 MiB (10714618 bytes) entries: 535 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Jul 05 21:30:25 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13913.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-07-05T21:03:11Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13914

date	job status	comment
Jul 05 21:03:10 UTC 2024	submitted	job id `13914` awaits release by job manager
Jul 05 21:04:03 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:12:41 UTC 2024	running	job `13914` is running
Jul 05 21:33:49 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13914.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1720214604.tar.gz` size: 47 MiB (50105860 bytes) entries: 1493 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Jul 05 21:33:49 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13914.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:20:56 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1720214604.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:03:15Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13915

date	job status	comment
Jul 05 21:03:15 UTC 2024	submitted	job id `13915` awaits release by job manager
Jul 05 21:04:08 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:12:44 UTC 2024	running	job `13915` is running
Jul 05 21:37:07 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13915.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1720214699.tar.gz` size: 47 MiB (50209525 bytes) entries: 1493 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Jul 05 21:37:07 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13915.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:21:15 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1720214699.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-07-05T21:03:19Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13916

date	job status	comment
Jul 05 21:03:18 UTC 2024	submitted	job id `13916` awaits release by job manager
Jul 05 21:04:10 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 21:13:55 UTC 2024	running	job `13916` is running
Jul 05 21:38:13 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13916.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720214759.tar.gz` size: 47 MiB (49953346 bytes) entries: 1493 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Jul 05 21:38:13 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13916.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:21:35 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1720214759.tar.gz` to S3 bucket succeeded

bedroge · 2024-07-05T22:10:13Z

The zen2 build failed due to a failing HMMER test:

    exercise   18 [ p7_hmmd_search_stats] ...     Aborted (core dumped)
FAILED [crash!]

Edit: just ran it manually, and it worked fine. Let's try it again...

bedroge · 2024-07-05T22:19:00Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2

eessi-bot · 2024-07-05T22:19:03Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 13920, for details & status see {2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634 (comment)

eessi-bot · 2024-07-05T22:19:03Z

Updates by the bot instance eessi-bot-mc-azure (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- no jobs were submitted

eessi-bot · 2024-07-05T22:19:06Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.07/pr_634/13920

date	job status	comment
Jul 05 22:19:06 UTC 2024	submitted	job id `13920` awaits release by job manager
Jul 05 22:19:42 UTC 2024	released	job awaits launch by Slurm scheduler
Jul 05 22:20:44 UTC 2024	running	job `13920` is running
Jul 05 22:46:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-13920.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1720218834.tar.gz` size: 47 MiB (50116079 bytes) entries: 1493 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `BWA/0.7.18-GCCcore-12.3.0.lua` `CapnProto/1.0.1-GCCcore-12.3.0.lua` `DendroPy/4.6.1-GCCcore-12.3.0.lua` `fastp/0.23.4-GCC-12.3.0.lua` `HMMER/3.4-gompi-2023a.lua` `IQ-TREE/2.3.5-gompi-2023a.lua` `KronaTools/2.8.1-GCCcore-12.3.0.lua` `LSD2/2.4.1-GCCcore-12.3.0.lua` `MAFFT/7.520-GCC-12.3.0-with-extensions.lua` `ncbi-vdb/3.0.10-gompi-2023a.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `BWA/0.7.18-GCCcore-12.3.0` `CapnProto/1.0.1-GCCcore-12.3.0` `DendroPy/4.6.1-GCCcore-12.3.0` `fastp/0.23.4-GCC-12.3.0` `HMMER/3.4-gompi-2023a` `IQ-TREE/2.3.5-gompi-2023a` `KronaTools/2.8.1-GCCcore-12.3.0` `LSD2/2.4.1-GCCcore-12.3.0` `MAFFT/7.520-GCC-12.3.0-with-extensions` `ncbi-vdb/3.0.10-gompi-2023a` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Jul 05 22:46:23 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 14/14 test case(s) from 14 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-13920.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Jul 06 05:21:54 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1720218834.tar.gz` to S3 bucket succeeded

{2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages

a746695

TopRichard added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Jul 5, 2024

bedroge reviewed Jul 5, 2024

View reviewed changes

easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-2023a.yml Outdated Show resolved Hide resolved

Update easystacks/software.eessi.io/2023.06/eessi-2023.06-eb-4.9.2-20…

4d9390e

…23a.yml Co-authored-by: Bob Dröge <[email protected]>

bedroge mentioned this pull request Jul 5, 2024

Remove /cvmfs/ in path to overlay upper directory in tarball script #636

Merged

bedroge added 2 commits July 5, 2024 22:02

implement changes from EESSI#635 and EESSI#636

49cbcc8

Merge branch '2023.06-software.eessi.io' into eessi-2023.06-Bio-packa…

693c9c0

…ges-gompi/2023a

Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software…

0967257

…-layer into eessi-2023.06-Bio-packages-gompi/2023a

bedroge approved these changes Jul 6, 2024

View reviewed changes

bedroge added the bot:deploy Ask bot to deploy missing software installations to EESSI label Jul 6, 2024

bedroge merged commit 8552b19 into EESSI:2023.06-software.eessi.io Jul 6, 2024

{2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634

{2023.06}[GCCcore/12.3.0-GCC/12.3.0-gompi/2023a] bio-packages #634

Uh oh!

Conversation

TopRichard commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024

Uh oh!

eessi-build-deploy-bot-deucalion bot commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024

Uh oh!

TopRichard commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-build-deploy-bot-deucalion bot commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

Uh oh!

TopRichard commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-build-deploy-bot-deucalion bot commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

eessi-bot bot commented Jul 5, 2024 • edited Loading Uh oh! There was an error while loading. Please reload this page.

Uh oh!

Uh oh!

TopRichard commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

bedroge commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading

eessi-bot bot commented Jul 5, 2024 •

edited

Loading