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Merged
merged 1 commit into from
Apr 25, 2024
Merged

{2023.06}[foss/2023a] SAMtools v1.18 #553

merged 1 commit into from
Apr 25, 2024

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@Neves-P
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@Neves-P Neves-P commented Apr 25, 2024

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eessi-bot bot commented Apr 25, 2024

Instance eessi-bot-mc-aws is configured to build:

  • arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/generic for repo eessi-hpc.org-2023.06-software
  • arch x86_64/generic for repo eessi.io-2023.06-compat
  • arch x86_64/generic for repo eessi.io-2023.06-software
  • arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
  • arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
  • arch x86_64/intel/haswell for repo eessi.io-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
  • arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
  • arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/generic for repo eessi-hpc.org-2023.06-software
  • arch aarch64/generic for repo eessi.io-2023.06-compat
  • arch aarch64/generic for repo eessi.io-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
  • arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
  • arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
  • arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
  • arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

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eessi-bot bot commented Apr 25, 2024

Instance eessi-bot-mc-azure is configured to build:

  • arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-compat
  • arch x86_64/amd/zen4 for repo eessi-hpc.org-2023.06-software
  • arch x86_64/amd/zen4 for repo eessi.io-2023.06-compat
  • arch x86_64/amd/zen4 for repo eessi.io-2023.06-software

@Neves-P
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Neves-P commented Apr 25, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic

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eessi-bot bot commented Apr 25, 2024 •
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:

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eessi-bot bot commented Apr 25, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)
  • account Neves-P has NO permission to send commands to the bot

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9849

date job status comment
Apr 25 07:52:46 UTC 2024 submitted job id 9849 awaits release by job manager
Apr 25 07:53:45 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 09:01:10 UTC 2024 running job 9849 is running
Apr 25 09:11:20 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9849.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-generic-1714035721.tar.gzsize: 1 MiB (1807466 bytes)
entries: 123
modules under 2023.06/software/linux/aarch64/generic/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/aarch64/generic/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/aarch64/generic
no other files in tarball
Apr 25 09:11:20 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9849.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:52:07 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-generic-1714035721.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Apr 25, 2024 •
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New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9850

date job status comment
Apr 25 07:52:49 UTC 2024 submitted job id 9850 awaits release by job manager
Apr 25 07:53:46 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 07:58:49 UTC 2024 running job 9850 is running
Apr 25 08:14:04 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9850.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-generic-1714031949.tar.gzsize: 1 MiB (1859584 bytes)
entries: 123
modules under 2023.06/software/linux/x86_64/generic/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/x86_64/generic/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/x86_64/generic
no other files in tarball
Apr 25 08:14:04 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9850.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:52:26 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-generic-1714031949.tar.gz to S3 bucket succeeded

@Neves-P
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Neves-P commented Apr 25, 2024

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

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eessi-bot bot commented Apr 25, 2024 •
edited
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Updates by the bot instance eessi-bot-mc-aws (click for details)

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1

  • received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell

  • received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from Neves-P

    • expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:

  • handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:

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eessi-bot bot commented Apr 25, 2024

Updates by the bot instance eessi-bot-mc-azure (click for details)
  • account Neves-P has NO permission to send commands to the bot

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9851

date job status comment
Apr 25 09:24:37 UTC 2024 submitted job id 9851 awaits release by job manager
Apr 25 09:25:25 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 09:29:35 UTC 2024 running job 9851 is running
Apr 25 09:37:12 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9851.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_v1-1714037423.tar.gzsize: 1 MiB (1817533 bytes)
entries: 123
modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/aarch64/neoverse_v1/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/aarch64/neoverse_v1
no other files in tarball
Apr 25 09:37:12 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9851.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:52:45 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_v1-1714037423.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9852

date job status comment
Apr 25 09:24:41 UTC 2024 submitted job id 9852 awaits release by job manager
Apr 25 09:25:23 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 11:34:59 UTC 2024 running job 9852 is running
Apr 25 11:45:09 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9852.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-aarch64-neoverse_n1-1714044934.tar.gzsize: 1 MiB (1797002 bytes)
entries: 123
modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/aarch64/neoverse_n1/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/aarch64/neoverse_n1
no other files in tarball
Apr 25 11:45:09 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9852.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:53:04 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-aarch64-neoverse_n1-1714044934.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9853

date job status comment
Apr 25 09:24:44 UTC 2024 submitted job id 9853 awaits release by job manager
Apr 25 09:25:27 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 09:30:38 UTC 2024 running job 9853 is running
Apr 25 09:49:46 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9853.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen2-1714037476.tar.gzsize: 1 MiB (1899233 bytes)
entries: 123
modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/x86_64/amd/zen2/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/x86_64/amd/zen2
no other files in tarball
Apr 25 09:49:46 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9853.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:53:24 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen2-1714037476.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9854

date job status comment
Apr 25 09:24:48 UTC 2024 submitted job id 9854 awaits release by job manager
Apr 25 09:25:29 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 09:30:39 UTC 2024 running job 9854 is running
Apr 25 09:42:32 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9854.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-amd-zen3-1714037458.tar.gzsize: 1 MiB (1893571 bytes)
entries: 123
modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/x86_64/amd/zen3/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/x86_64/amd/zen3
no other files in tarball
Apr 25 09:42:32 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9854.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:53:43 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-amd-zen3-1714037458.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9855

date job status comment
Apr 25 09:24:52 UTC 2024 submitted job id 9855 awaits release by job manager
Apr 25 09:25:31 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 09:30:41 UTC 2024 running job 9855 is running
Apr 25 09:46:43 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9855.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-haswell-1714037475.tar.gzsize: 1 MiB (1890269 bytes)
entries: 123
modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/x86_64/intel/haswell/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/x86_64/intel/haswell
no other files in tarball
Apr 25 09:46:43 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9855.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:54:02 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-haswell-1714037475.tar.gz to S3 bucket succeeded

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eessi-bot bot commented Apr 25, 2024 •
edited
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New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_553/9856

date job status comment
Apr 25 09:24:56 UTC 2024 submitted job id 9856 awaits release by job manager
Apr 25 09:25:33 UTC 2024 released job awaits launch by Slurm scheduler
Apr 25 09:30:43 UTC 2024 running job 9856 is running
Apr 25 09:44:38 UTC 2024 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-9856.out
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714037460.tar.gzsize: 1 MiB (1889542 bytes)
entries: 123
modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all
SAMtools/1.18-GCC-12.3.0.lua
software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software
SAMtools/1.18-GCC-12.3.0
other under 2023.06/software/linux/x86_64/intel/skylake_avx512
no other files in tarball
Apr 25 09:44:38 UTC 2024 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-9856.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Apr 25 11:54:22 UTC 2024 uploaded transfer of eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1714037460.tar.gz to S3 bucket succeeded

@bedroge bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI 2023.06-software.eessi.io 2023.06 version of software.eessi.io labels Apr 25, 2024
@bedroge bedroge merged commit c0efea4 into EESSI:2023.06-software.eessi.io Apr 25, 2024
@Neves-P Neves-P deleted the 2023.06-software.eessi.io-SAMtools-1.18-GCC-12.3.0 branch August 7, 2024 12:46
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