{2023.06}[2022b] R-bundle-Bioconductor v3.16 #526

bedroge · 2024-03-30T21:59:50Z

9 out of 172 required modules missing:

* intltool/0.51.0-GCCcore-12.2.0 (intltool-0.51.0-GCCcore-12.2.0.eb)
* RapidJSON/1.1.0-GCCcore-12.2.0 (RapidJSON-1.1.0-GCCcore-12.2.0.eb)
* gperf/3.1-GCCcore-12.2.0 (gperf-3.1-GCCcore-12.2.0.eb)
* RE2/2023-03-01-GCCcore-12.2.0 (RE2-2023-03-01-GCCcore-12.2.0.eb)
* utf8proc/2.8.0-GCCcore-12.2.0 (utf8proc-2.8.0-GCCcore-12.2.0.eb)
* Arrow/11.0.0-gfbf-2022b (Arrow-11.0.0-gfbf-2022b.eb)
* DBus/1.15.2-GCCcore-12.2.0 (DBus-1.15.2-GCCcore-12.2.0.eb)
* arrow-R/11.0.0.3-foss-2022b-R-4.2.2 (arrow-R-11.0.0.3-foss-2022b-R-4.2.2.eb)
* R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2 (R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb)

eessi-bot · 2024-03-30T21:59:54Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

bedroge · 2024-03-30T22:01:25Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-03-30T22:01:28Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 8807, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)

eessi-bot · 2024-03-30T22:01:32Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8807

date	job status	comment
Mar 30 22:01:31 UTC 2024	submitted	job id `8807` awaits release by job manager
Mar 30 22:02:06 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 30 22:06:08 UTC 2024	running	job `8807` is running
Mar 31 03:05:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8807.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1711853024.tar.gz` size: 7124 MiB (7470266729 bytes) entries: 26000 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Mar 31 03:05:23 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8807.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2024-03-31T05:30:51Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-03-31T05:30:54Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 8832, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 8833, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 8834, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 8835, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 8836, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 8837, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 8838, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)

eessi-bot · 2024-03-31T05:30:58Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8832

date	job status	comment
Mar 31 05:30:57 UTC 2024	submitted	job id `8832` awaits release by job manager
Mar 31 05:31:35 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:35:48 UTC 2024	running	job `8832` is running
Apr 01 08:56:12 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8832.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1711879866.tar.gz` size: 7124 MiB (7470357646 bytes) entries: 26000 modules under 2023.06/software/linux/aarch64/generic/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Apr 01 08:56:12 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8832.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-03-31T05:31:01Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8833

date	job status	comment
Mar 31 05:31:01 UTC 2024	submitted	job id `8833` awaits release by job manager
Mar 31 05:31:37 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:35:50 UTC 2024	running	job `8833` is running
Apr 01 08:56:13 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-8833.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1711879140.tar.gz` size: 7123 MiB (7469818817 bytes) entries: 26000 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Apr 01 08:56:13 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8833.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-03-31T05:31:05Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8834

date	job status	comment
Mar 31 05:31:04 UTC 2024	submitted	job id `8834` awaits release by job manager
Mar 31 05:31:43 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:37:59 UTC 2024	running	job `8834` is running
Mar 31 07:30:14 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8834.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1711869080.tar.gz` size: 45 MiB (48189028 bytes) entries: 1457 modules under 2023.06/software/linux/x86_64/generic/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Mar 31 07:30:14 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8834.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-03-31T05:31:08Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8835

date	job status	comment
Mar 31 05:31:07 UTC 2024	submitted	job id `8835` awaits release by job manager
Mar 31 05:31:39 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:36:53 UTC 2024	running	job `8835` is running
Mar 31 07:41:43 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8835.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1711869631.tar.gz` size: 46 MiB (48756140 bytes) entries: 1458 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Mar 31 07:41:43 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8835.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-03-31T05:31:12Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8836

date	job status	comment
Mar 31 05:31:11 UTC 2024	submitted	job id `8836` awaits release by job manager
Mar 31 05:31:41 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:37:57 UTC 2024	running	job `8836` is running
Mar 31 07:04:31 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8836.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1711867805.tar.gz` size: 46 MiB (48744485 bytes) entries: 1458 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Mar 31 07:04:31 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8836.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-03-31T05:31:15Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8837

date	job status	comment
Mar 31 05:31:14 UTC 2024	submitted	job id `8837` awaits release by job manager
Mar 31 05:31:44 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:38:00 UTC 2024	running	job `8837` is running
Mar 31 07:31:17 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8837.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1711869190.tar.gz` size: 46 MiB (48776441 bytes) entries: 1458 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Mar 31 07:31:17 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8837.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-03-31T05:31:18Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_526/8838

date	job status	comment
Mar 31 05:31:17 UTC 2024	submitted	job id `8838` awaits release by job manager
Mar 31 05:31:46 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 31 05:38:02 UTC 2024	running	job `8838` is running
Mar 31 07:09:55 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-8838.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1711868017.tar.gz` size: 46 MiB (48636856 bytes) entries: 1458 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Mar 31 07:09:55 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-8838.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2024-03-31T18:12:31Z

The neoverse_v1 build worked fine, but all x86_64 builds failed due to:

make[3]: Entering directory '/tmp/bot/easybuild/build/RbundleBioconductor/3.16/foss-2022b-R-4.2.2/Rhdf5lib/Rhdf5lib/src/hdf5/src'
  CC       H5.lo
In file included from H5.c:22:
H5private.h:1793:2: error: #error "We need __func__ or __FUNCTION__ to test function names!"
 1793 | #error "We need __func__ or __FUNCTION__ to test function names!"
      |  ^~~~~
In file included from H5VMprivate.h:23,
                 from H5Fprivate.h:35,
                 from H5Cprivate.h:35,
                 from H5ACprivate.h:33,
                 from H5.c:23:
H5.c: In function H5_init_library:
H5Eprivate.h:33:70: error: FUNC undeclared (first use in this function)
   33 | #define HERROR(maj_id, min_id, ...) H5E_printf_stack(NULL, __FILE__, FUNC, __LINE__, H5E_ERR_CLS_g, maj_id, min_id, __VA_ARGS__)
      |                                                                      ^~~~
H5Eprivate.h:124:5: note: in expansion of macro HERROR
  124 |     HERROR(H5E_INTERNAL, H5E_MPIERRSTR, "%s", H5E_mpi_error_str);                   \
      |     ^~~~~~
H5Eprivate.h:131:5: note: in expansion of macro HMPI_ERROR
  131 |     HMPI_ERROR(mpierr);                                                       \
      |     ^~~~~~~~~~

bedroge · 2024-04-01T12:02:46Z

            SUMMARY OF THE HDF5 CONFIGURATION
            =================================

General Information:
-------------------
                   HDF5 Version: 1.10.7

Seems like it's picking up a wrong HDF5, as we have ('HDF5', '1.14.0') in the easyconfig.

edit: the source tarball of Rhdf5lib contains hdf5small_cxx_hl_1.10.7.tar.gz, so I guess it's building/picking up that version instead of the EB-installed version.

bedroge · 2024-04-08T11:54:36Z

bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3

eessi-bot · 2024-04-08T11:54:38Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 9206, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)

eessi-bot · 2024-04-08T11:54:43Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9206

date	job status	comment
Apr 08 11:54:42 UTC 2024	submitted	job id `9206` awaits release by job manager
Apr 08 11:55:37 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 08 11:59:41 UTC 2024	running	job `9206` is running
Apr 08 16:33:33 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9206.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1712592719.tar.gz` size: 7130 MiB (7476805748 bytes) entries: 26001 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Apr 08 16:33:33 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9206.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2024-04-08T18:16:59Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-04-08T18:17:01Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 9217, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)

eessi-bot · 2024-04-08T18:17:06Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9217

date	job status	comment
Apr 08 18:17:05 UTC 2024	submitted	job id `9217` awaits release by job manager
Apr 08 18:17:44 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 08 18:22:48 UTC 2024	running	job `9217` is running
Apr 08 21:54:02 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9217.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1712611991.tar.gz` size: 7124 MiB (7470257365 bytes) entries: 26000 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Apr 08 21:54:02 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9217.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

xinan1911 · 2024-04-16T14:40:06Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-04-16T14:40:10Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from xinan1911
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from xinan1911
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from xinan1911
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from xinan1911
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from xinan1911
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from xinan1911
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 9508, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 9509, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 9510, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 9511, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 9512, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 9513, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)

eessi-bot · 2024-04-16T14:40:15Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9508

date	job status	comment
Apr 16 14:40:14 UTC 2024	submitted	job id `9508` awaits release by job manager
Apr 16 14:40:19 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 16 16:50:22 UTC 2024	running	job `9508` is running
Apr 16 21:52:39 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9508.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1713302786.tar.gz` size: 7124 MiB (7470394696 bytes) entries: 26000 modules under 2023.06/software/linux/aarch64/generic/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Apr 16 21:52:39 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9508.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-04-16T14:40:18Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9509

date	job status	comment
Apr 16 14:40:18 UTC 2024	submitted	job id `9509` awaits release by job manager
Apr 16 14:40:21 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 16 15:47:30 UTC 2024	running	job `9509` is running
Apr 16 20:50:04 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9509.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1713298981.tar.gz` size: 7123 MiB (7469864033 bytes) entries: 26000 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Apr 16 20:50:04 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9509.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-04-16T14:40:23Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9510

date	job status	comment
Apr 16 14:40:22 UTC 2024	submitted	job id `9510` awaits release by job manager
Apr 16 14:41:25 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 16 14:46:33 UTC 2024	running	job `9510` is running
Apr 16 20:53:18 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9510.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1713298909.tar.gz` size: 7129 MiB (7475386582 bytes) entries: 26000 modules under 2023.06/software/linux/x86_64/generic/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Apr 16 20:53:18 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9510.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-04-16T14:40:27Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9511

date	job status	comment
Apr 16 14:40:26 UTC 2024	submitted	job id `9511` awaits release by job manager
Apr 16 14:41:23 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 16 14:46:31 UTC 2024	running	job `9511` is running
Apr 16 21:12:57 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9511.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1713300001.tar.gz` size: 7130 MiB (7476899068 bytes) entries: 26001 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Apr 16 21:12:57 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9511.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-04-16T14:40:31Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9512

date	job status	comment
Apr 16 14:40:30 UTC 2024	submitted	job id `9512` awaits release by job manager
Apr 16 14:41:27 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 16 14:46:35 UTC 2024	running	job `9512` is running
Apr 16 20:54:21 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9512.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1713299004.tar.gz` size: 7130 MiB (7476959548 bytes) entries: 26001 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Apr 16 20:54:21 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9512.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

eessi-bot · 2024-04-16T14:40:35Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9513

date	job status	comment
Apr 16 14:40:34 UTC 2024	submitted	job id `9513` awaits release by job manager
Apr 16 14:41:29 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 16 14:46:37 UTC 2024	running	job `9513` is running
Apr 16 19:50:34 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9513.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713295437.tar.gz` size: 7130 MiB (7476622507 bytes) entries: 26001 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Apr 16 19:50:34 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9513.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

…-layer into bioconductor_2022b

bedroge · 2024-04-19T08:28:32Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-04-19T08:28:35Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 9617, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 9618, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 9619, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 9620, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 9621, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 9622, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 9623, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 9624, for details & status see {2023.06}[2022b] R-bundle-Bioconductor v3.16 #526 (comment)

eessi-bot · 2024-04-19T08:28:39Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9617

date	job status	comment
Apr 19 08:28:38 UTC 2024	submitted	job id `9617` awaits release by job manager
Apr 19 08:29:09 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 09:23:19 UTC 2024	running	job `9617` is running
Apr 19 14:24:26 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9617.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1713535142.tar.gz` size: 7124 MiB (7470286145 bytes) entries: 26002 modules under 2023.06/software/linux/aarch64/generic/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/generic/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/generic no other files in tarball
Apr 19 14:24:26 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9617.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:02:59 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1713535142.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:28:42Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9618

date	job status	comment
Apr 19 08:28:42 UTC 2024	submitted	job id `9618` awaits release by job manager
Apr 19 08:29:11 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 09:24:30 UTC 2024	running	job `9618` is running
Apr 19 14:23:12 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9618.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1713534962.tar.gz` size: 7123 MiB (7469798925 bytes) entries: 26002 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_n1 no other files in tarball
Apr 19 14:23:12 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9618.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:04:27 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1713534962.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:28:46Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9619

date	job status	comment
Apr 19 08:28:45 UTC 2024	submitted	job id `9619` awaits release by job manager
Apr 19 08:29:14 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 08:33:49 UTC 2024	running	job `9619` is running
Apr 19 12:14:03 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9619.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1713527561.tar.gz` size: 7124 MiB (7470132963 bytes) entries: 26002 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/aarch64/neoverse_v1 no other files in tarball
Apr 19 12:14:03 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9619.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:01:31 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1713527561.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:28:50Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9620

date	job status	comment
Apr 19 08:28:49 UTC 2024	submitted	job id `9620` awaits release by job manager
Apr 19 08:29:20 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 08:33:55 UTC 2024	running	job `9620` is running
Apr 19 14:50:59 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9620.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1713536196.tar.gz` size: 7128 MiB (7475261051 bytes) entries: 26002 modules under 2023.06/software/linux/x86_64/generic/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/generic/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/generic no other files in tarball
Apr 19 14:50:59 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9620.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:07:24 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1713536196.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:28:54Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9621

date	job status	comment
Apr 19 08:28:53 UTC 2024	submitted	job id `9621` awaits release by job manager
Apr 19 08:29:16 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 08:33:51 UTC 2024	running	job `9621` is running
Apr 19 14:53:21 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9621.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1713536329.tar.gz` size: 7130 MiB (7476823650 bytes) entries: 26003 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen2 no other files in tarball
Apr 19 14:53:21 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9621.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:08:51 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1713536329.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:28:58Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9622

date	job status	comment
Apr 19 08:28:57 UTC 2024	submitted	job id `9622` awaits release by job manager
Apr 19 08:29:18 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 08:30:29 UTC 2024	running	job `9622` is running
Apr 19 13:01:38 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9622.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1713530375.tar.gz` size: 7130 MiB (7476703755 bytes) entries: 26003 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/amd/zen3 no other files in tarball
Apr 19 13:01:38 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9622.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:05:56 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1713530375.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:29:02Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9623

date	job status	comment
Apr 19 08:29:01 UTC 2024	submitted	job id `9623` awaits release by job manager
Apr 19 08:29:22 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 08:35:02 UTC 2024	running	job `9623` is running
Apr 19 14:51:01 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9623.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1713536145.tar.gz` size: 7130 MiB (7476898879 bytes) entries: 26003 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/haswell no other files in tarball
Apr 19 14:51:01 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9623.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:10:22 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1713536145.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-04-19T08:29:06Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.04/pr_526/9624

date	job status	comment
Apr 19 08:29:05 UTC 2024	submitted	job id `9624` awaits release by job manager
Apr 19 08:29:25 UTC 2024	released	job awaits launch by Slurm scheduler
Apr 19 08:35:04 UTC 2024	running	job `9624` is running
Apr 19 13:30:06 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-9624.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713531824.tar.gz` size: 7130 MiB (7476558484 bytes) entries: 26003 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `Arrow/11.0.0-gfbf-2022b.lua` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2.lua` `RapidJSON/1.1.0-GCCcore-12.2.0.lua` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2.lua` `RE2/2023-03-01-GCCcore-12.2.0.lua` `utf8proc/2.8.0-GCCcore-12.2.0.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `Arrow/11.0.0-gfbf-2022b` `arrow-R/11.0.0.3-foss-2022b-R-4.2.2` `RapidJSON/1.1.0-GCCcore-12.2.0` `R-bundle-Bioconductor/3.16-foss-2022b-R-4.2.2` `RE2/2023-03-01-GCCcore-12.2.0` `utf8proc/2.8.0-GCCcore-12.2.0` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 no other files in tarball
Apr 19 13:30:06 UTC 2024	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ PASSED ] Ran 9/9 test case(s) from 9 check(s) (0 failure(s), 0 skipped, 0 aborted) Details ✅ job output file `slurm-9624.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Apr 25 10:11:56 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1713531824.tar.gz` to S3 bucket succeeded

trz42

All good: 🎉

add R-bundle-Bioconductor-3.16-foss-2022b-R-4.2.2.eb

70d94a1

use PR 20316 for Bioconductor

03b708f

bedroge added 4 commits April 19, 2024 10:22

Merge branch '2023.06-software.eessi.io' of github.com:EESSI/software…

ddccb95

…-layer into bioconductor_2022b

move bioconductor to 4.9.1 easystack

dee801b

add bioconductor

cbad690

solve merge conflict

494185b

remove blank line

786e1e8

bedroge added ready-to-deploy Mark a PR as ready to deploy 2023.06-software.eessi.io 2023.06 version of software.eessi.io labels Apr 19, 2024

trz42 added the bot:deploy Ask bot to deploy missing software installations to EESSI label Apr 25, 2024

bedroge removed the ready-to-deploy Mark a PR as ready to deploy label Apr 26, 2024

trz42 approved these changes Apr 26, 2024

View reviewed changes

trz42 merged commit f2e8b88 into EESSI:2023.06-software.eessi.io Apr 26, 2024

bedroge deleted the bioconductor_2022b branch April 26, 2024 10:03

{2023.06}[2022b] R-bundle-Bioconductor v3.16 #526

{2023.06}[2022b] R-bundle-Bioconductor v3.16 #526

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