{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497

t1mk1k · 2024-03-12T09:20:11Z

No description provided.

eessi-bot · 2024-03-12T09:20:15Z

Instance eessi-bot-mc-aws is configured to build:

arch x86_64/generic for repo eessi-hpc.org-2023.06-compat
arch x86_64/generic for repo eessi-hpc.org-2023.06-software
arch x86_64/generic for repo eessi.io-2023.06-compat
arch x86_64/generic for repo eessi.io-2023.06-software
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/haswell for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/haswell for repo eessi.io-2023.06-compat
arch x86_64/intel/haswell for repo eessi.io-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi-hpc.org-2023.06-software
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-compat
arch x86_64/intel/skylake_avx512 for repo eessi.io-2023.06-software
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen2 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen2 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen2 for repo eessi.io-2023.06-software
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-compat
arch x86_64/amd/zen3 for repo eessi-hpc.org-2023.06-software
arch x86_64/amd/zen3 for repo eessi.io-2023.06-compat
arch x86_64/amd/zen3 for repo eessi.io-2023.06-software
arch aarch64/generic for repo eessi-hpc.org-2023.06-compat
arch aarch64/generic for repo eessi-hpc.org-2023.06-software
arch aarch64/generic for repo eessi.io-2023.06-compat
arch aarch64/generic for repo eessi.io-2023.06-software
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_n1 for repo eessi.io-2023.06-software
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi-hpc.org-2023.06-software
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-compat
arch aarch64/neoverse_v1 for repo eessi.io-2023.06-software

bedroge · 2024-03-12T09:25:21Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-03-12T09:25:24Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7528, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)

eessi-bot · 2024-03-12T09:25:27Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7528

date	job status	comment
Mar 12 09:25:27 UTC 2024	submitted	job id `7528` awaits release by job manager
Mar 12 09:25:49 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 09:29:51 UTC 2024	running	job `7528` is running
Mar 12 09:32:54 UTC 2024	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-7528.out` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts No artefacts were created or found.
Mar 12 09:32:54 UTC 2024	test result	(no tests yet)

bedroge · 2024-03-12T09:38:58Z

It's failing because of:

  g++ -shared -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FFTW/3.3.10-GCC-13.2.0/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FFTW/3.3.10-GCC-13.2.0/lib -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/ScaLAPACK/2.2.0-gompi-2023b-fb/lib -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/lib -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/13.2.0/lib64 -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/GCCcore/13.2.0/lib -O2 -ftree-vectorize -mcpu=native -fno-math-errno -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FFTW/3.3.10-GCC-13.2.0/include -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/include -I/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/FlexiBLAS/3.3.1-GCC-13.2.0/include/flexiblas build/temp.linux-aarch64-cpython-311/src/fit.o build/temp.linux-aarch64-cpython-311/src/fitting.o -L/cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Python/3.11.5-GCCcore-13.2.0/lib -lcasa_scimath -lcasa_scimath_f -lboost_python-py311-mt -lcasa_python3 -o build/lib.linux-aarch64-cpython-311/casacore/fitting/_fitting.cpython-311-aarch64-linux-gnu.so
  /cvmfs/software.eessi.io/versions/2023.06/compat/linux/aarch64/usr/bin/ld: cannot find -lboost_python-py311-mt: No such file or directory
  collect2: error: ld returned 1 exit status
  error: command '/tmp/eb-zqmf_waz/eb-i3hfwmjh/tmp3hqdnuyh/rpath_wrappers/gxx_wrapper/g++' failed with exit code 1
  error: subprocess-exited-with-error
  
   python setup.py bdist_wheel did not run successfully.
   exit code: 1

In the Boost.Python installation dir I only see the following ones:

$ ls /cvmfs/software.eessi.io/versions/2023.06/software/linux/aarch64/neoverse_v1/software/Boost.Python/1.83.0-GCC-13.2.0/lib
cmake                             libboost_python311-mt-a64.a
libboost_python311.a              libboost_python311-mt-a64.so
libboost_python311-a64.a          libboost_python311-mt-a64.so.1.83.0
libboost_python311-a64.so         libboost_python311.so
libboost_python311-a64.so.1.83.0  libboost_python311.so.1.83.0

bedroge · 2024-03-12T09:45:51Z

Actually, it seems like it cannot find Boost and Casacore:

  Could not find a Python boost library! Please use your package manager to install boost.

  Or install it manually:

  http://boostorg.github.io/python/doc/html/index.html

    warnings.warn(no_boost_error)
  /tmp/bot/easybuild/build/pythoncasacore/3.5.2/foss-2023b/pythoncasacore/python-casacore-3.5.2/setup.py:154: UserWarning: Could not find Casacore!

  Casacore is a critical requirement. Please install Casacore using a package manager or install it manually.
  You can find installation instructions on:

   https://github.com/casacore/casacore

  If you have Casacore installed in a non default location, you need to specify the location:

  $ python setup.py build_ext -I/opt/casacore/include:/other/include/path -L/opt/casacore/lib

  Don't give up!

bedroge · 2024-03-12T09:48:23Z

It looks like it's trying to use $LD_LIBRARY_PATH to find the location of the required libraries:
https://github.com/casacore/python-casacore/blob/master/setup.py#L54
But in EESSI we don't use/set $LD_LIBRARY_PATH, so we'll have to provide the locations in some other way.

ocaisa · 2024-03-12T09:52:25Z

A quick fix would be to (temporarily) set LD_LIBRARY_PATH=$LIBRARY_PATH

t1mk1k · 2024-03-12T10:17:03Z

A quick fix would be to (temporarily) set LD_LIBRARY_PATH=$LIBRARY_PATH

Should I change that in the easyconfig? Or is this something that can be set in the easystack file (if so, I'm not sure which EB argument to use)?

ocaisa · 2024-03-12T10:30:19Z

I would do it in the easyconfig, you could do that in a forgiving way:

if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi

and I think you need it placed like https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/torchvf/torchvf-0.1.3-foss-2022a-CUDA-11.7.0.eb#L34

bedroge · 2024-03-12T11:21:27Z

I would do it in the easyconfig, you could do that in a forgiving way:
if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi 
and I think you need it placed like https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/torchvf/torchvf-0.1.3-foss-2022a-CUDA-11.7.0.eb#L34

I just tried this interactively on the build cluster by adding:

        'preinstallopts': 'if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi && '

and then the build completed without any issues. I agree it would be best to add this to the easyconfig, as other people may run into this as well.

t1mk1k · 2024-03-12T17:37:01Z

I would do it in the easyconfig, you could do that in a forgiving way:
if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi 
and I think you need it placed like https://github.com/easybuilders/easybuild-easyconfigs/blob/develop/easybuild/easyconfigs/t/torchvf/torchvf-0.1.3-foss-2022a-CUDA-11.7.0.eb#L34
I just tried this interactively on the build cluster by adding:
        'preinstallopts': 'if [[ -z "$LD_LIBRARY_PATH" ]]; then export LD_LIBRARY_PATH="$LIBRARY_PATH"; fi && '
and then the build completed without any issues. I agree it would be best to add this to the easyconfig, as other people may run into this as well.

Thanks for testing! I've created a PR in easybuild-easyconfigs: easybuilders/easybuild-easyconfigs#20089

ocaisa · 2024-03-12T18:33:15Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1

eessi-bot · 2024-03-12T18:33:17Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_v1 from ocaisa
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_v1 resulted in:
- submitted job 7601, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)

eessi-bot · 2024-03-12T18:33:21Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_v1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7601

date	job status	comment
Mar 12 18:33:20 UTC 2024	submitted	job id `7601` awaits release by job manager
Mar 12 18:33:49 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:39:03 UTC 2024	running	job `7601` is running
Mar 12 18:44:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7601.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_v1-1710268976.tar.gz` size: 14 MiB (15694002 bytes) entries: 721 modules under 2023.06/software/linux/aarch64/neoverse_v1/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/aarch64/neoverse_v1/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/aarch64/neoverse_v1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:44:23 UTC 2024	test result	(no tests yet)
Mar 12 19:08:29 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_v1-1710268976.tar.gz` to S3 bucket succeeded

bedroge · 2024-03-12T18:45:56Z

bot: build repo:eessi.io-2023.06-software arch:aarch64/generic
bot: build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1
bot: build repo:eessi.io-2023.06-software arch:x86_64/generic
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2
bot: build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell
bot: build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512

eessi-bot · 2024-03-12T18:45:59Z

Updates by the bot instance eessi-bot-mc-aws (click for details)

received bot command build repo:eessi.io-2023.06-software arch:aarch64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/generic
received bot command build repo:eessi.io-2023.06-software arch:aarch64/neoverse_n1 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1
received bot command build repo:eessi.io-2023.06-software arch:x86_64/generic from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/generic
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen2 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2
received bot command build repo:eessi.io-2023.06-software arch:x86_64/amd/zen3 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/haswell from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell
received bot command build repo:eessi.io-2023.06-software arch:x86_64/intel/skylake_avx512 from bedroge
- expanded format: build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512
handling command build repository:eessi.io-2023.06-software architecture:aarch64/generic resulted in:
- submitted job 7603, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:aarch64/neoverse_n1 resulted in:
- submitted job 7604, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/generic resulted in:
- submitted job 7605, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen2 resulted in:
- submitted job 7607, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/amd/zen3 resulted in:
- submitted job 7608, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/haswell resulted in:
- submitted job 7609, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)
handling command build repository:eessi.io-2023.06-software architecture:x86_64/intel/skylake_avx512 resulted in:
- submitted job 7610, for details & status see {2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497 (comment)

eessi-bot · 2024-03-12T18:46:03Z

New job on instance eessi-bot-mc-aws for architecture aarch64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7603

date	job status	comment
Mar 12 18:46:02 UTC 2024	submitted	job id `7603` awaits release by job manager
Mar 12 18:46:28 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:51:00 UTC 2024	running	job `7603` is running
Mar 12 18:57:55 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7603.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-generic-1710269788.tar.gz` size: 14 MiB (15665469 bytes) entries: 721 modules under 2023.06/software/linux/aarch64/generic/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/aarch64/generic/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/aarch64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:57:55 UTC 2024	test result	(no tests yet)
Mar 12 19:08:48 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-generic-1710269788.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:06Z

New job on instance eessi-bot-mc-aws for architecture aarch64-neoverse_n1 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7604

date	job status	comment
Mar 12 18:46:05 UTC 2024	submitted	job id `7604` awaits release by job manager
Mar 12 18:46:30 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:52:08 UTC 2024	running	job `7604` is running
Mar 12 18:59:02 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7604.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-neoverse_n1-1710269892.tar.gz` size: 14 MiB (15685877 bytes) entries: 721 modules under 2023.06/software/linux/aarch64/neoverse_n1/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/aarch64/neoverse_n1/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/aarch64/neoverse_n1 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:59:02 UTC 2024	test result	(no tests yet)
Mar 12 19:09:09 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-neoverse_n1-1710269892.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:10Z

New job on instance eessi-bot-mc-aws for architecture x86_64-generic for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7605

date	job status	comment
Mar 12 18:46:09 UTC 2024	submitted	job id `7605` awaits release by job manager
Mar 12 18:46:36 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:47:49 UTC 2024	running	job `7605` is running
Mar 12 18:53:23 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7605.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-generic-1710269570.tar.gz` size: 15 MiB (15971737 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/generic/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/generic/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/generic `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:53:23 UTC 2024	test result	(no tests yet)
Mar 12 19:09:30 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-generic-1710269570.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:13Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen2 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7607

date	job status	comment
Mar 12 18:46:12 UTC 2024	submitted	job id `7607` awaits release by job manager
Mar 12 18:46:32 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:47:44 UTC 2024	running	job `7607` is running
Mar 12 18:53:21 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7607.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen2-1710269516.tar.gz` size: 15 MiB (16065441 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/amd/zen2/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/amd/zen2/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/amd/zen2 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:53:21 UTC 2024	test result	(no tests yet)
Mar 12 19:09:50 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen2-1710269516.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:16Z

New job on instance eessi-bot-mc-aws for architecture x86_64-amd-zen3 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7608

date	job status	comment
Mar 12 18:46:16 UTC 2024	submitted	job id `7608` awaits release by job manager
Mar 12 18:46:34 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:53:19 UTC 2024	running	job `7608` is running
Mar 12 18:59:03 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7608.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-amd-zen3-1710269855.tar.gz` size: 15 MiB (16063906 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/amd/zen3/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/amd/zen3/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/amd/zen3 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 18:59:03 UTC 2024	test result	(no tests yet)
Mar 12 19:10:10 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-amd-zen3-1710269855.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:20Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-haswell for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7609

date	job status	comment
Mar 12 18:46:19 UTC 2024	submitted	job id `7609` awaits release by job manager
Mar 12 18:46:37 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:54:30 UTC 2024	running	job `7609` is running
Mar 12 19:01:14 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7609.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-haswell-1710269992.tar.gz` size: 15 MiB (16076530 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/intel/haswell/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/intel/haswell/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/intel/haswell `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 19:01:14 UTC 2024	test result	(no tests yet)
Mar 12 19:10:29 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-haswell-1710269992.tar.gz` to S3 bucket succeeded

eessi-bot · 2024-03-12T18:46:23Z

New job on instance eessi-bot-mc-aws for architecture x86_64-intel-skylake_avx512 for repository eessi.io-2023.06-software in job dir /project/def-users/SHARED/jobs/2024.03/pr_497/7610

date	job status	comment
Mar 12 18:46:22 UTC 2024	submitted	job id `7610` awaits release by job manager
Mar 12 18:46:39 UTC 2024	released	job awaits launch by Slurm scheduler
Mar 12 18:55:39 UTC 2024	running	job `7610` is running
Mar 12 19:01:16 UTC 2024	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-7610.out` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1710270007.tar.gz` size: 15 MiB (16080842 bytes) entries: 721 modules under 2023.06/software/linux/x86_64/intel/skylake_avx512/modules/all `libspatialindex/1.9.3-GCCcore-13.2.0.lua` `python-casacore/3.5.2-foss-2023b.lua` software under 2023.06/software/linux/x86_64/intel/skylake_avx512/software `libspatialindex/1.9.3-GCCcore-13.2.0` `python-casacore/3.5.2-foss-2023b` other under 2023.06/software/linux/x86_64/intel/skylake_avx512 `.lmod/cache/spiderT.lua` `.lmod/cache/spiderT.luac_5.1` `.lmod/cache/timestamp`
Mar 12 19:01:16 UTC 2024	test result	(no tests yet)
Mar 12 19:10:48 UTC 2024	uploaded	transfer of `eessi-2023.06-software-linux-x86_64-intel-skylake_avx512-1710270007.tar.gz` to S3 bucket succeeded

bedroge · 2024-03-12T20:37:10Z

Thanks for testing! I've created a PR in easybuild-easyconfigs: easybuilders/easybuild-easyconfigs#20089

Thanks for the quick fix!

{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3

0343684

Use PR that sets LD_LIBRARY_PATH for python-casacore

0295571

ocaisa added the bot:deploy Ask bot to deploy missing software installations to EESSI label Mar 12, 2024

bedroge approved these changes Mar 12, 2024

View reviewed changes

bedroge merged commit 222d929 into EESSI:2023.06-software.eessi.io Mar 12, 2024

trz42 added the 2023.06-software.eessi.io 2023.06 version of software.eessi.io label Apr 5, 2024

{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497

{2023.06}[foss/2023b] python-casacore 3.5.2 + libspatialindex 1.9.3 #497

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