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Merged
merged 4 commits into from
Oct 29, 2025
Merged

{2025.06}[2024a] SciPy-bundle v2024.05 #1210

merged 4 commits into from
Oct 29, 2025

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@boegel
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@boegel boegel commented Sep 30, 2025

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@boegel boegel added the 2025.06-software.eessi.io 2025.06 version of software.eessi.io label Sep 30, 2025
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boegel commented Sep 30, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

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eessi-bot-aws bot commented Sep 30, 2025 •
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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.09/pr_1210/93521

date job status comment
Sep 30 09:57:13 UTC 2025 submitted job id 93521 awaits release by job manager
Sep 30 09:58:03 UTC 2025 released job awaits launch by Slurm scheduler
Sep 30 10:04:06 UTC 2025 running job 93521 is running
Sep 30 12:45:19 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-93521.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen2-17592361680.tar.gzsize: 652 MiB (683787735 bytes)
entries: 21601
modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all
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cffi/1.16.0-GCCcore-13.3.0.lua
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Eigen/3.4.0-GCCcore-13.3.0.lua
expat/2.6.2-GCCcore-13.3.0.lua
flit/3.9.0-GCCcore-13.3.0.lua
git/2.45.1-GCCcore-13.3.0.lua
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Rust/1.78.0-GCCcore-13.3.0.lua
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no other files in tarball
Sep 30 12:45:19 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-93521.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-bot-jsc bot commented Sep 30, 2025 •
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New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.09/pr_1210/14093266

date job status comment
Sep 30 09:57:14 UTC 2025 submitted job id 14093266 awaits release by job manager
Sep 30 09:57:52 UTC 2025 released job awaits launch by Slurm scheduler
Sep 30 09:58:56 UTC 2025 running job 14093266 is running
Sep 30 11:15:15 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-14093266.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-nvidia-grace-17592304640.tar.gzsize: 641 MiB (672751619 bytes)
entries: 21599
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other under 2025.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Sep 30 11:15:15 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-14093266.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@eessi-bot-deucalion
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eessi-bot-deucalion bot commented Sep 30, 2025 •
edited
Loading

New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.09/pr_1210/566179

date job status comment
Sep 30 09:57:16 UTC 2025 submitted job id 566179 awaits release by job manager
Sep 30 09:57:48 UTC 2025 released job awaits launch by Slurm scheduler
Sep 30 09:58:51 UTC 2025 running job 566179 is running
Sep 30 16:10:01 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-566179.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17592482070.tar.gzsize: 642 MiB (673883148 bytes)
entries: 21599
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cffi/1.16.0-GCCcore-13.3.0.lua
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other under 2025.06/software/linux/aarch64/a64fx
no other files in tarball
Sep 30 16:10:01 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-566179.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@boegel
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boegel commented Sep 30, 2025

Build of scipy extension of SciPy-bundle v2024.05 is failing for both nvidia/grace and x86_64/amd/zen2 with:

In file included from ../scipy/scipy-1.13.1/scipy/io/_fast_matrix_market/src/_fmm_core_read_coo.cpp:5:
../scipy/scipy-1.13.1/scipy/io/_fast_matrix_market/src/_fmm_core.hpp:14:10: fatal error: pybind11/pybind11.h: No such file or directory
   14 | #include <pybind11/pybind11.h>
      |          ^~~~~~~~~~~~~~~~~~~~~
compilation terminated.

That's strange, because meson setup (configure step) was happy since pybind11/2.12.0-GCC-13.3.0 is a dependency:

Run-time dependency pybind11 found: YES 2.12.0

Let's get Python-bundle-PyPI in place first, via:

@boegel
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boegel commented Sep 30, 2025

Seems like this problem could be related by picking up CMake from the EESSI compat layer:

Found CMake: /cvmfs/software.eessi.io/versions/2025.06/compat/linux/aarch64/usr/bin/cmake (4.0.2)
WARNING: CMake Toolchain: Failed to determine CMake compilers state

In the log for a non-EESSI installation of SciPy-bundle/2024.05-gfbf-2024a, I found this:

Did not find CMake 'cmake'
Found CMake: NO

@boegel
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boegel commented Oct 1, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2

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eessi-bot-aws bot commented Oct 1, 2025 •
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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/93769

date job status comment
Oct 01 08:10:55 UTC 2025 submitted job id 93769 awaits release by job manager
Oct 01 08:11:56 UTC 2025 released job awaits launch by Slurm scheduler
Oct 01 08:16:59 UTC 2025 running job 93769 is running
Oct 01 09:01:56 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-93769.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen2-17593092440.tar.gzsize: 18 MiB (19830342 bytes)
entries: 1760
modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all
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Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
software under 2025.06/software/linux/x86_64/amd/zen2/software
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hypothesis/6.103.1-GCCcore-13.3.0
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Cython/3.0.10-GCCcore-13.3.0/20251001_082232UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251001_082346UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251001_081748UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251001_081819UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251001_082855UTC
other under 2025.06/software/linux/x86_64/amd/zen2
no other files in tarball
Oct 01 09:01:56 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-93769.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@bedroge bedroge mentioned this pull request Oct 3, 2025
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bedroge commented Oct 3, 2025

See #1216.

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bedroge commented Oct 28, 2025

EB 5.1.2 has been rebuilt with a patch, so let's try again.

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc for:arch=aarch64/nvidia/grace

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New job on instance eessi-bot-jsc for repository eessi.io-2025.06-software
Building on: nvidia-grace
Building for: aarch64/nvidia/grace
Job dir: /p/project1/ceasybuilders/eessibot/jobs/2025.10/pr_1210/14151976

date job status comment
Oct 28 10:49:54 UTC 2025 submitted job id 14151976 awaits release by job manager
Oct 28 10:50:11 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 11:57:23 UTC 2025 running job 14151976 is running
Oct 28 12:41:46 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-14151976.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-nvidia-grace-17616550490.tar.gzsize: 168 MiB (177128354 bytes)
entries: 14441
modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
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hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
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Cython/3.0.10-GCCcore-13.3.0/20251028_120355UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_120613UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_115916UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_115938UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_120914UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_123534UTC
other under 2025.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Oct 28 12:41:46 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-14151976.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:55:05 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-aarch64-nvidia-grace-17616550490.tar.gz to S3 bucket succeeded

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bedroge commented Oct 28, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen2

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen2
Building for: x86_64/amd/zen2
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99915

date job status comment
Oct 28 10:55:05 UTC 2025 submitted job id 99915 awaits release by job manager
Oct 28 10:55:37 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 11:00:40 UTC 2025 running job 99915 is running
Oct 28 12:35:41 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99915.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen2-17616548360.tar.gzsize: 173 MiB (181586534 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
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Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
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Catch2/2.13.10-GCCcore-13.3.0/20251028_110842UTC
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Cython/3.0.10-GCCcore-13.3.0/20251028_110643UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_110759UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_110156UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_110229UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_111304UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_123247UTC
other under 2025.06/software/linux/x86_64/amd/zen2
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Oct 28 12:35:41 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99915.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:55:02 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-amd-zen2-17616548360.tar.gz to S3 bucket succeeded

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bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen3
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/amd/zen4
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/skylake_avx512
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/haswell
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/icelake
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/cascadelake
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/intel/sapphirerapids
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=x86_64/generic
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/generic
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_n1
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_v1
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen3
Building for: x86_64/amd/zen3
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99916

date job status comment
Oct 28 12:45:21 UTC 2025 submitted job id 99916 awaits release by job manager
Oct 28 12:45:44 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:51:10 UTC 2025 running job 99916 is running
Oct 28 14:04:05 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99916.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen3-17616600770.tar.gzsize: 173 MiB (181570733 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/amd/zen3/modules/all
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Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
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Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/amd/zen3/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_125652UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_125525UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_125620UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125139UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125203UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130014UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_140008UTC
other under 2025.06/software/linux/x86_64/amd/zen3
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Oct 28 14:04:05 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99916.out
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✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:55:14 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-amd-zen3-17616600770.tar.gz to S3 bucket succeeded

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: amd-zen4
Building for: x86_64/amd/zen4
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99917

date job status comment
Oct 28 12:45:26 UTC 2025 submitted job id 99917 awaits release by job manager
Oct 28 12:45:47 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:51:12 UTC 2025 running job 99917 is running
Oct 28 13:45:47 UTC 2025 finished
😁 SUCCESS (click triangle for details)
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✅ job output file slurm-99917.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen4-17616590020.tar.gzsize: 172 MiB (181314431 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/amd/zen4/modules/all
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Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
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Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
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Catch2/2.13.10-GCCcore-13.3.0/20251028_125546UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_125438UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_125522UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125127UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125145UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_125825UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_134239UTC
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Oct 28 13:45:47 UTC 2025 test result
😁 SUCCESS (click triangle for details)
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[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
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✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:55:26 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-amd-zen4-17616590020.tar.gz to S3 bucket succeeded

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-skylake_avx512
Building for: x86_64/intel/skylake_avx512
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99918

date job status comment
Oct 28 12:45:31 UTC 2025 submitted job id 99918 awaits release by job manager
Oct 28 12:45:54 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:53:27 UTC 2025 running job 99918 is running
Oct 28 14:08:29 UTC 2025 finished
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✅ job output file slurm-99918.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
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eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17616603670.tar.gzsize: 172 MiB (181320428 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/intel/skylake_avx512/modules/all
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Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/x86_64/intel/skylake_avx512/software
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Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/intel/skylake_avx512/reprod
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Cython/3.0.10-GCCcore-13.3.0/
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Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_125858UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125334UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125357UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130259UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_140515UTC
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Oct 28 14:08:29 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
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Oct 29 12:55:39 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-intel-skylake_avx512-17616603670.tar.gz to S3 bucket succeeded

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New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.10/pr_1210/622744

date job status comment
Oct 28 12:45:33 UTC 2025 submitted job id 622744 awaits release by job manager
Oct 28 12:45:55 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:46:57 UTC 2025 running job 622744 is running
Oct 28 16:44:03 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-622744.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17616695670.tar.gzsize: 17 MiB (18749259 bytes)
entries: 1760
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
software under 2025.06/software/linux/aarch64/a64fx/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
reprod directories under 2025.06/software/linux/aarch64/a64fx/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_131709UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_131312UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_131540UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125040UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125154UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_132724UTC
other under 2025.06/software/linux/aarch64/a64fx
no other files in tarball
Oct 28 16:44:03 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-622744.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-haswell
Building for: x86_64/intel/haswell
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99919

date job status comment
Oct 28 12:45:35 UTC 2025 submitted job id 99919 awaits release by job manager
Oct 28 12:45:49 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:51:15 UTC 2025 running job 99919 is running
Oct 28 14:09:55 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99919.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-intel-haswell-17616604110.tar.gzsize: 173 MiB (181528510 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/intel/haswell/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/x86_64/intel/haswell/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/intel/haswell/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_125739UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_125613UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_125704UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125138UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125202UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130111UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_140557UTC
other under 2025.06/software/linux/x86_64/intel/haswell
no other files in tarball
Oct 28 14:09:55 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99919.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:55:51 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-intel-haswell-17616604110.tar.gz to S3 bucket succeeded

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eessi-bot-aws bot commented Oct 28, 2025 •
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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-icelake
Building for: x86_64/intel/icelake
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99920

date job status comment
Oct 28 12:45:40 UTC 2025 submitted job id 99920 awaits release by job manager
Oct 28 12:45:51 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:52:20 UTC 2025 running job 99920 is running
Oct 28 13:53:26 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99920.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-intel-icelake-17616594820.tar.gzsize: 172 MiB (181204173 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/intel/icelake/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/x86_64/intel/icelake/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/intel/icelake/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_125714UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_125607UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_125648UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125225UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125244UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130007UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_135038UTC
other under 2025.06/software/linux/x86_64/intel/icelake
no other files in tarball
Oct 28 13:53:26 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99920.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:56:03 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-intel-icelake-17616594820.tar.gz to S3 bucket succeeded

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eessi-bot-aws bot commented Oct 28, 2025 •
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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-cascadelake
Building for: x86_64/intel/cascadelake
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99921

date job status comment
Oct 28 12:45:45 UTC 2025 submitted job id 99921 awaits release by job manager
Oct 28 12:47:05 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:57:33 UTC 2025 running job 99921 is running
Oct 28 14:19:44 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99921.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-intel-cascadelake-17616610340.tar.gzsize: 172 MiB (181277609 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/intel/cascadelake/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/x86_64/intel/cascadelake/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/intel/cascadelake/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_130339UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_130212UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_130305UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125706UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125731UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130729UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_141617UTC
other under 2025.06/software/linux/x86_64/intel/cascadelake
no other files in tarball
Oct 28 14:19:44 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99921.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:56:15 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-intel-cascadelake-17616610340.tar.gz to S3 bucket succeeded

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eessi-bot-aws bot commented Oct 28, 2025 •
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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: intel-sapphirerapids
Building for: x86_64/intel/sapphirerapids
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99922

date job status comment
Oct 28 12:45:49 UTC 2025 submitted job id 99922 awaits release by job manager
Oct 28 12:47:07 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:57:39 UTC 2025 running job 99922 is running
Oct 28 14:44:07 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99922.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17616625320.tar.gzsize: 172 MiB (181283277 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/intel/sapphirerapids/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/x86_64/intel/sapphirerapids/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/intel/sapphirerapids/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_130405UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_130144UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_130331UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125748UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125821UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130927UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_144123UTC
other under 2025.06/software/linux/x86_64/intel/sapphirerapids
no other files in tarball
Oct 28 14:44:07 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99922.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:56:27 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-intel-sapphirerapids-17616625320.tar.gz to S3 bucket succeeded

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: generic
Building for: x86_64/generic
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99923

date job status comment
Oct 28 12:45:54 UTC 2025 submitted job id 99923 awaits release by job manager
Oct 28 12:47:03 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:57:30 UTC 2025 running job 99923 is running
Oct 28 14:14:12 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99923.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-generic-17616606730.tar.gzsize: 173 MiB (181957489 bytes)
entries: 14441
modules under 2025.06/software/linux/x86_64/generic/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/x86_64/generic/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/x86_64/generic/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_130302UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_130136UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251028_130227UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251028_125702UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251028_125726UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251028_130632UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251028_141019UTC
other under 2025.06/software/linux/x86_64/generic
no other files in tarball
Oct 28 14:14:12 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-99923.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:56:40 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-x86_64-generic-17616606730.tar.gz to S3 bucket succeeded

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: generic
Building for: aarch64/generic
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/99924

date job status comment
Oct 28 12:45:59 UTC 2025 submitted job id 99924 awaits release by job manager
Oct 28 12:46:56 UTC 2025 released job awaits launch by Slurm scheduler
Oct 28 12:54:29 UTC 2025 running job 99924 is running
Oct 28 14:04:01 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-99924.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-generic-17616600450.tar.gzsize: 168 MiB (176829801 bytes)
entries: 14441
modules under 2025.06/software/linux/aarch64/generic/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/aarch64/generic/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/aarch64/generic/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251028_130313UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251028_130208UTC
Eigen/3.4.0-GCCcore-13.3.0/
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Building on: neoverse_n1
Building for: aarch64/neoverse_n1
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Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
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bedroge commented Oct 28, 2025

SciPy test failure for neoverse_v1:

FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
= 2 failed, 61427 passed, 2620 skipped, 244 xfailed, 15 xpassed, 47 warnings in 977.15s (0:16:17) =

=================================== FAILURES ===================================
____________________ TestPdist.test_pdist_correlation_iris _____________________
scipy/spatial/tests/test_distance.py:996: in test_pdist_correlation_iris
    assert_allclose(Y_test1, Y_right, rtol=eps)
        X          = array([[5.1, 3.5, 1.4, 0.2],
       [4.9, 3. , 1.4, 0.2],
       [4.7, 3.2, 1.3, 0.2],
       [4.6, 3.1, 1.5, 0.2],
  ...],
       [6.3, 2.5, 5. , 1.9],
       [6.5, 3. , 5.2, 2. ],
       [6.2, 3.4, 5.4, 2.3],
       [5.9, 3. , 5.1, 1.8]])
        Y_right    = array([4.0013388e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398788e-03, 8.4122900e-05])
        Y_test1    = array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03, ...,
       4.29187441e-03, 5.53987884e-03, 8.41229000e-05])
        eps        = 1e-07
        self       = <scipy.spatial.tests.test_distance.TestPdist object at 0x4000d491e630>
/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/neoverse_v1/software/Python/3.12.3-GCCcore-13.3.0/lib/python3.12/contextlib.py:81: in inner
    return func(*args, **kwds)
E   AssertionError: 
E   Not equal to tolerance rtol=1e-07, atol=0
E   
E   Mismatched elements: 1 / 11175 (0.00895%)
E   Max absolute difference: 4.99925779e-09
E   Max relative difference: 4.86117773e-08
E    x: array([4.001339e-03, 2.608895e-05, 1.831548e-03, ..., 4.291874e-03,
E          5.539879e-03, 8.412290e-05])
E    y: array([4.001339e-03, 2.608895e-05, 1.831548e-03, ..., 4.291874e-03,
E          5.539879e-03, 8.412290e-05])
        args       = (<function assert_allclose.<locals>.compare at 0x40016d467f60>, array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03,...0e-05]), array([4.
0013388e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398788e-03, 8.4122900e-05]))
        func       = <function assert_array_compare at 0x4000bf292980>
        kwds       = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance rtol=1e-07, atol=0', 'verbose': True}
        self       = <contextlib._GeneratorContextManager object at 0x4000bf241010>
________________ TestPdist.test_pdist_correlation_iris_float32 _________________
scipy/spatial/tests/test_distance.py:1004: in test_pdist_correlation_iris_float32
    assert_allclose(Y_test1, Y_right, rtol=eps, verbose=verbose > 2)
        X          = array([[5.1, 3.5, 1.4, 0.2],
       [4.9, 3. , 1.4, 0.2],
       [4.7, 3.2, 1.3, 0.2],
       [4.6, 3.1, 1.5, 0.2],
  ...],
       [6.3, 2.5, 5. , 1.9],
       [6.5, 3. , 5.2, 2. ],
       [6.2, 3.4, 5.4, 2.3],
       [5.9, 3. , 5.1, 1.8]])
        Y_right    = array([4.0013390e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398787e-03, 8.4122898e-05], dtype=float32)
        Y_test1    = array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03, ...,
       4.29187441e-03, 5.53987884e-03, 8.41229000e-05])
        eps        = 1e-07
        self       = <scipy.spatial.tests.test_distance.TestPdist object at 0x4000d491e810>
/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/neoverse_v1/software/Python/3.12.3-GCCcore-13.3.0/lib/python3.12/contextlib.py:81: in inner
    return func(*args, **kwds)
E   AssertionError: 
E   Not equal to tolerance rtol=1e-07, atol=0
E   
E   Mismatched elements: 1 / 11175 (0.00895%)
E   Max absolute difference: 3.13789296e-08
E   Max relative difference: 9.60883844e-08
        args       = (<function assert_allclose.<locals>.compare at 0x40016d4663e0>, array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03,...[4.0013390e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398787e-03, 8.4122898e-05], dtype=float32))
        func       = <function assert_array_compare at 0x4000bf292980>
        kwds       = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance rtol=1e-07, atol=0', 'verbose': False}
        self       = <contextlib._GeneratorContextManager object at 0x4000bf241010>

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bedroge commented Oct 28, 2025

Similarly, for a64fx:

FAILED scipy/optimize/tests/test_minimize_constrained.py::TestTrustRegionConstr::test_list_of_problems
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris
FAILED scipy/spatial/tests/test_distance.py::TestPdist::test_pdist_correlation_iris_float32
= 3 failed, 61426 passed, 2620 skipped, 244 xfailed, 15 xpassed, 47 warnings in 6641.17s (1:50:41) =

=================================== FAILURES ===================================
_________________ TestTrustRegionConstr.test_list_of_problems __________________
scipy/optimize/tests/test_minimize_constrained.py:506: in test_list_of_problems
    raise RuntimeError("Invalid termination condition.")
E   RuntimeError: Invalid termination condition.
        grad       = '3-point'
        hess       = <scipy.optimize._hessian_update_strategy.BFGS object at 0xfffd88564bf0>
        list_of_problems = [<scipy.optimize.tests.test_minimize_constrained.Maratos object at 0xfffd90483140>, <scipy.optimize.tests.test_minimiz...ject at 0xfffd903913d0>, <scipy.opti
mize.tests.test_minimize_constrained.HyperbolicIneq object at 0xfffd903908c0>, ...]
        prob       = <scipy.optimize.tests.test_minimize_constrained.BoundedRosenbrock object at 0xfffd90d80950>
        result     =            message: The maximum number of function evaluations is exceeded.
           success: False
            stat...penalty: 1.0
 barrier_parameter: 0.020000000000000004
 barrier_tolerance: 0.020000000000000004
             niter: 1000
        self       = <scipy.optimize.tests.test_minimize_constrained.TestTrustRegionConstr testMethod=test_list_of_problems>
        sup        = <numpy.testing._private.utils.suppress_warnings object at 0xfffd90282960>
____________________ TestPdist.test_pdist_correlation_iris _____________________
scipy/spatial/tests/test_distance.py:996: in test_pdist_correlation_iris
    assert_allclose(Y_test1, Y_right, rtol=eps)
        X          = array([[5.1, 3.5, 1.4, 0.2],
       [4.9, 3. , 1.4, 0.2],
       [4.7, 3.2, 1.3, 0.2],
       [4.6, 3.1, 1.5, 0.2],
  ...],
       [6.3, 2.5, 5. , 1.9],
       [6.5, 3. , 5.2, 2. ],
       [6.2, 3.4, 5.4, 2.3],
       [5.9, 3. , 5.1, 1.8]])
        Y_right    = array([4.0013388e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398788e-03, 8.4122900e-05])
        Y_test1    = array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03, ...,
       4.29187441e-03, 5.53987884e-03, 8.41229000e-05])
        eps        = 1e-07
        self       = <scipy.spatial.tests.test_distance.TestPdist object at 0xfffe235da7e0>
/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/a64fx/software/Python/3.12.3-GCCcore-13.3.0/lib/python3.12/contextlib.py:81: in inner
    return func(*args, **kwds)
E   AssertionError: 
E   Not equal to tolerance rtol=1e-07, atol=0
E   
E   Mismatched elements: 1 / 11175 (0.00895%)
E   Max absolute difference: 4.99925779e-09
E   Max relative difference: 4.86117773e-08
E    x: array([4.001339e-03, 2.608895e-05, 1.831548e-03, ..., 4.291874e-03,
E          5.539879e-03, 8.412290e-05])
E    y: array([4.001339e-03, 2.608895e-05, 1.831548e-03, ..., 4.291874e-03,
E          5.539879e-03, 8.412290e-05])
        args       = (<function assert_allclose.<locals>.compare at 0xfffd68a3b4c0>, array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03,...0e-05]), array([4.0013388e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398788e-03, 8.4122900e-05]))
        func       = <function assert_array_compare at 0xfffe38dca660>
        kwds       = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance rtol=1e-07, atol=0', 'verbose': True}
        self       = <contextlib._GeneratorContextManager object at 0xfffe38d8b7a0>
________________ TestPdist.test_pdist_correlation_iris_float32 _________________
scipy/spatial/tests/test_distance.py:1004: in test_pdist_correlation_iris_float32
    assert_allclose(Y_test1, Y_right, rtol=eps, verbose=verbose > 2)
        X          = array([[5.1, 3.5, 1.4, 0.2],
       [4.9, 3. , 1.4, 0.2],
       [4.7, 3.2, 1.3, 0.2],
       [4.6, 3.1, 1.5, 0.2],
  ...],
       [6.3, 2.5, 5. , 1.9],
       [6.5, 3. , 5.2, 2. ],
       [6.2, 3.4, 5.4, 2.3],
       [5.9, 3. , 5.1, 1.8]])
        Y_right    = array([4.0013390e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398787e-03, 8.4122898e-05], dtype=float32)
        Y_test1    = array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03, ...,
       4.29187441e-03, 5.53987884e-03, 8.41229000e-05])
        eps        = 1e-07
        self       = <scipy.spatial.tests.test_distance.TestPdist object at 0xfffe235da9c0>
/cvmfs/software.eessi.io/versions/2025.06/software/linux/aarch64/a64fx/software/Python/3.12.3-GCCcore-13.3.0/lib/python3.12/contextlib.py:81: in inner
    return func(*args, **kwds)
E   AssertionError: 
E   Not equal to tolerance rtol=1e-07, atol=0
E   
E   Mismatched elements: 1 / 11175 (0.00895%)
E   Max absolute difference: 3.13789296e-08
E   Max relative difference: 9.60883844e-08
        args       = (<function assert_allclose.<locals>.compare at 0xfffd68a3ab60>, array([4.00133876e-03, 2.60889537e-05, 1.83154822e-03,...[4.0013390e-03, 2.6088954e-05, 1.8315482e-03, ..., 4.2918744e-03,
       5.5398787e-03, 8.4122898e-05], dtype=float32))
        func       = <function assert_array_compare at 0xfffe38dca660>
        kwds       = {'equal_nan': True, 'err_msg': '', 'header': 'Not equal to tolerance rtol=1e-07, atol=0', 'verbose': False}
        self       = <contextlib._GeneratorContextManager object at 0xfffe38d8b7a0>

@bedroge bedroge mentioned this pull request Oct 28, 2025
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bedroge commented Oct 29, 2025

Updated hook (that ignores test failures for neoverse v1 and a64fx) has been ingested, retrying...

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_v1
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_v1
Building for: aarch64/neoverse_v1
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/100167

date job status comment
Oct 29 08:13:40 UTC 2025 submitted job id 100167 awaits release by job manager
Oct 29 08:13:45 UTC 2025 released job awaits launch by Slurm scheduler
Oct 29 08:16:46 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job100167.result does not exist in job directory or reading it failed.
  • No artefacts were found/reported.
Oct 29 08:16:46 UTC 2025 test result
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  • Job test file _bot_job100167.test does not exist in job directory or reading it failed.

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New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.10/pr_1210/623279

date job status comment
Oct 29 08:13:43 UTC 2025 submitted job id 623279 awaits release by job manager
Oct 29 08:14:44 UTC 2025 released job awaits launch by Slurm scheduler
Oct 29 08:15:47 UTC 2025 running job 623279 is running
Oct 29 08:16:48 UTC 2025 finished
🤷 UNKNOWN (click triangle for detailed information)
  • Job results file _bot_job623279.result does not exist in job directory, or parsing it failed.
  • No artefacts were found/reported.
Oct 29 08:16:48 UTC 2025 test result
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  • Job test file _bot_job623279.test does not exist in job directory, or parsing it failed.

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bedroge commented Oct 29, 2025 •
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Cancelled the jobs, may be better to wait until EESSI/software-layer-scripts#118 has been merged, otherwise it may pick up an outdated version from the git repo (?).

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bedroge commented Oct 29, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws for:arch=aarch64/neoverse_v1
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

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New job on instance eessi-bot-mc-aws for repository eessi.io-2025.06-software
Building on: neoverse_v1
Building for: aarch64/neoverse_v1
Job dir: /project/def-users/SHARED/jobs/2025.10/pr_1210/100168

date job status comment
Oct 29 08:17:32 UTC 2025 submitted job id 100168 awaits release by job manager
Oct 29 08:17:50 UTC 2025 released job awaits launch by Slurm scheduler
Oct 29 08:18:53 UTC 2025 running job 100168 is running
Oct 29 09:09:16 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-100168.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-neoverse_v1-17617288290.tar.gzsize: 168 MiB (176769736 bytes)
entries: 14441
modules under 2025.06/software/linux/aarch64/neoverse_v1/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
software under 2025.06/software/linux/aarch64/neoverse_v1/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
reprod directories under 2025.06/software/linux/aarch64/neoverse_v1/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251029_082516UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251029_082425UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251029_082457UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251029_081927UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251029_081942UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251029_082732UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251029_090632UTC
other under 2025.06/software/linux/aarch64/neoverse_v1
no other files in tarball
Oct 29 09:09:16 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-100168.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:57:15 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-aarch64-neoverse_v1-17617288290.tar.gz to S3 bucket succeeded

@eessi-bot-deucalion
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eessi-bot-deucalion bot commented Oct 29, 2025 •
edited
Loading

New job on instance eessi-bot-deucalion for repository eessi.io-2025.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.10/pr_1210/623280

date job status comment
Oct 29 08:17:34 UTC 2025 submitted job id 623280 awaits release by job manager
Oct 29 08:17:53 UTC 2025 released job awaits launch by Slurm scheduler
Oct 29 08:18:56 UTC 2025 running job 623280 is running
Oct 29 12:39:12 UTC 2025 finished
😁 SUCCESS (click triangle for details)
Details
✅ job output file slurm-623280.out
✅ no message matching FATAL:
✅ no message matching ERROR:
✅ no message matching FAILED:
✅ no message matching required modules missing:
✅ found message(s) matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-a64fx-17617412490.tar.gzsize: 168 MiB (177117065 bytes)
entries: 14441
modules under 2025.06/software/linux/aarch64/a64fx/modules/all
Catch2/2.13.10-GCCcore-13.3.0.lua
Cython/3.0.10-GCCcore-13.3.0.lua
Eigen/3.4.0-GCCcore-13.3.0.lua
SciPy-bundle/2024.05-gfbf-2024a.lua
hypothesis/6.103.1-GCCcore-13.3.0.lua
meson-python/0.16.0-GCCcore-13.3.0.lua
pybind11/2.12.0-GCC-13.3.0.lua
software under 2025.06/software/linux/aarch64/a64fx/software
Catch2/2.13.10-GCCcore-13.3.0
Cython/3.0.10-GCCcore-13.3.0
Eigen/3.4.0-GCCcore-13.3.0
SciPy-bundle/2024.05-gfbf-2024a
hypothesis/6.103.1-GCCcore-13.3.0
meson-python/0.16.0-GCCcore-13.3.0
pybind11/2.12.0-GCC-13.3.0
reprod directories under 2025.06/software/linux/aarch64/a64fx/reprod
Catch2/2.13.10-GCCcore-13.3.0/20251029_084855UTC
Cython/3.0.10-GCCcore-13.3.0/
Cython/3.0.10-GCCcore-13.3.0/20251029_084503UTC
Eigen/3.4.0-GCCcore-13.3.0/
Eigen/3.4.0-GCCcore-13.3.0/20251029_084727UTC
SciPy-bundle/2024.05-gfbf-2024a/
SciPy-bundle/2024.05-gfbf-2024a/20251029_123028UTC
hypothesis/6.103.1-GCCcore-13.3.0/
hypothesis/6.103.1-GCCcore-13.3.0/20251029_082232UTC
meson-python/0.16.0-GCCcore-13.3.0/
meson-python/0.16.0-GCCcore-13.3.0/20251029_082346UTC
pybind11/2.12.0-GCC-13.3.0/
pybind11/2.12.0-GCC-13.3.0/20251029_085907UTC
other under 2025.06/software/linux/aarch64/a64fx
no other files in tarball
Oct 29 12:39:12 UTC 2025 test result
😁 SUCCESS (click triangle for details)
ReFrame Summary
[ PASSED ] Ran 0/0 test case(s) from 0 check(s) (0 failure(s), 0 skipped, 0 aborted)
Details
✅ job output file slurm-623280.out
✅ no message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case
Oct 29 12:55:03 UTC 2025 uploaded transfer of eessi-2025.06-software-linux-aarch64-a64fx-17617412490.tar.gz to S3 bucket succeeded

@ocaisa
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ocaisa commented Oct 29, 2025

@bedroge I've merged that now

@bedroge bedroge added the ready-to-deploy Mark a PR as ready to deploy label Oct 29, 2025
@bedroge bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Oct 29, 2025
@bedroge bedroge mentioned this pull request Oct 29, 2025
Closed
@ocaisa ocaisa merged commit efca200 into EESSI:main Oct 29, 2025
81 of 104 checks passed
@boegel boegel deleted the 2025.06-SciPy-bundle-2024a branch October 30, 2025 09:51
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@bedroge bedroge bedroge approved these changes

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@boegel @bedroge @ocaisa