{2023.06}[2022b,a64fx] apps originally built with EB 4.9.0 #1187

hvelab · 2025-09-09T12:07:38Z

Based on #1013

hvelab · 2025-09-09T12:08:25Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

gpu-bot-ugent · 2025-09-09T12:08:31Z

Label bot:build has been set by user hvelab, but this person does not have permission to trigger builds

eessi-bot-deucalion · 2025-09-09T12:08:40Z

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.09/pr_1187/542005

date	job status	comment
Sep 09 12:08:38 UTC 2025	submitted	job id `542005` awaits release by job manager
Sep 09 12:09:00 UTC 2025	released	job awaits launch by Slurm scheduler
Sep 09 12:10:04 UTC 2025	running	job `542005` is running
Sep 09 13:10:16 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-542005.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17574230200.tar.gz` size: 21 MiB (22058757 bytes) entries: 899 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Bison/3.8.2-GCCcore-12.2.0.lua` `ICU/72.1-GCCcore-12.2.0.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `PCRE2/10.40-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Bison/3.8.2-GCCcore-12.2.0` `ICU/72.1-GCCcore-12.2.0` `Ninja/1.11.1-GCCcore-12.2.0` `PCRE2/10.40-GCCcore-12.2.0` reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
Sep 09 13:10:16 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 2/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 3/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 4/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] ( 5/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_a64fx+default P: perf: 583.04 timesteps/s (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 581.176 timesteps/s (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.69 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.73 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8863.55 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8502.57 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 6/10 test case(s) from 10 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-542005.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

removing Harfbuzz as it depends on rust

hvelab · 2025-09-09T15:07:19Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

gpu-bot-ugent · 2025-09-09T15:07:24Z

Label bot:build has been set by user hvelab, but this person does not have permission to trigger builds

eessi-bot-deucalion · 2025-09-09T15:07:28Z

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.09/pr_1187/542189

date	job status	comment
Sep 09 15:07:27 UTC 2025	submitted	job id `542189` awaits release by job manager
Sep 09 15:08:04 UTC 2025	released	job awaits launch by Slurm scheduler
Sep 09 15:09:07 UTC 2025	running	job `542189` is running
Sep 09 16:10:02 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-542189.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17574338440.tar.gz` size: 4 MiB (4782424 bytes) entries: 183 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Highway/1.0.3-GCCcore-12.2.0.lua` `Ninja/1.11.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Highway/1.0.3-GCCcore-12.2.0` `Ninja/1.11.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
Sep 09 16:10:02 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 2/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 3/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 4/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] ( 5/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_a64fx+default P: perf: 583.459 timesteps/s (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 582.273 timesteps/s (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.71 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.71 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8792.42 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8739.6 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 6/10 test case(s) from 10 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-542189.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2025-09-25T14:31:47Z

Previous attempts failed due to the Rust issue, which has been solved now. Let's try again.

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

eessi-bot-deucalion · 2025-09-25T14:31:57Z

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.09/pr_1187/554969

date	job status	comment
Sep 25 14:31:55 UTC 2025	submitted	job id `554969` awaits release by job manager
Sep 25 14:32:52 UTC 2025	released	job awaits launch by Slurm scheduler
Sep 25 14:33:55 UTC 2025	running	job `554969` is running
Sep 25 15:48:00 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-554969.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17588148890.tar.gz` size: 5 MiB (5269771 bytes) entries: 1288 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Catch2/2.13.9-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `gfbf/2022b.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Catch2/2.13.9-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `Highway/1.0.3-GCCcore-12.2.0` `gfbf/2022b` `googletest/1.12.1-GCCcore-12.2.0` `hypothesis/6.68.2-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
Sep 25 15:48:00 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 2/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 3/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 4/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] ( 5/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_a64fx+default P: perf: 583.052 timesteps/s (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 583.986 timesteps/s (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.69 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.71 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8794.49 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8525.9 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 6/10 test case(s) from 10 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-554969.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2025-09-25T17:49:13Z

These numpy tests failed:

FAILED core/tests/test_deprecations.py::TestQuantileInterpolationDeprecation::test_deprecated[percentile]
FAILED core/tests/test_deprecations.py::TestQuantileInterpolationDeprecation::test_deprecated[nanpercentile]
FAILED core/tests/test_numeric.py::TestFloatExceptions::test_warnings - Asser...
FAILED lib/tests/test_function_base.py::TestCorrCoef::test_extreme - Floating...
FAILED lib/tests/test_nanfunctions.py::TestNanFunctions_Percentile::test_empty
FAILED polynomial/tests/test_classes.py::test_bad_conditioned_fit[Polynomial]
FAILED polynomial/tests/test_classes.py::test_bad_conditioned_fit[Legendre]
FAILED polynomial/tests/test_classes.py::test_bad_conditioned_fit[Chebyshev]
FAILED polynomial/tests/test_classes.py::test_bad_conditioned_fit[Laguerre]
FAILED polynomial/tests/test_classes.py::test_bad_conditioned_fit[Hermite] - ...
FAILED polynomial/tests/test_classes.py::test_bad_conditioned_fit[HermiteE]
= 11 failed, 25364 passed, 222 skipped, 1307 deselected, 33 xfailed, 4 xpassed, 775 warnings in 948.84s (0:15:48) =

boegel · 2025-09-26T05:38:48Z

@bedroge I would just log that as a known issue, see also #318

Note that we also have some magic in our hooks to help with getting fewer numpy test failures on neoverse_v1 (we use -march=armv8.4-a instead of -march=native), see:

{2023.06}[2022b] SciPy-bundle v2023.02 #448

bedroge · 2025-09-26T10:06:12Z

@bedroge I would just log that as a known issue, see also #318

Note that we also have some magic in our hooks to help with getting fewer numpy test failures on neoverse_v1 (we use -march=armv8.4-a instead of -march=native), see:

{2023.06}[2022b] SciPy-bundle v2023.02 #448

I just tried it interactively with -march=armv8.2-a (see https://en.wikipedia.org/wiki/Fujitsu_A64FX and https://www.fujitsu.com/global/products/computing/servers/supercomputer/a64fx/), and then numpy installs without issues. I guess the culprit may be sve, as that's probably disabled with armv8.2-a. Now retrying with armv8.2-a+sve.

bedroge · 2025-09-26T11:48:12Z

Confirmed: with armv8.2-a+sve the same 11 tests fail. So we can either ignore the failing tests or build without sve support.

edit: maybe I should try SciPy itself as well with both approaches.

Scipy built with --optarch="march=armv8.2-a" has two failing tests:

FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139 - AssertionError: linprog status 4, message: The solution does not satisfy the constraints within the...
FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139 - AssertionError: linprog status 4, message: The solution does not satisfy the constraints wi...

hvelab · 2025-09-29T10:02:02Z

I will split this PR into two, I'll move the SciPy bundle so I it's cleaner with the hook modification, and the rest of the apps will remain in this one

remove scipy to split it into another PR

hvelab · 2025-09-29T10:03:39Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

gpu-bot-ugent · 2025-09-29T10:03:43Z

Label bot:build has been set by user hvelab, but this person does not have permission to trigger builds

eessi-bot-deucalion · 2025-09-29T10:03:45Z

error: easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2022b.yml: patch does not apply

Unable to download or merge changes between the source branch and the destination branch.
Tip: This can usually be resolved by syncing your branch and resolving any merge conflicts.

hvelab · 2025-09-29T10:08:58Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

gpu-bot-ugent · 2025-09-29T10:09:04Z

Label bot:build has been set by user hvelab, but this person does not have permission to trigger builds

eessi-bot-deucalion · 2025-09-29T10:09:07Z

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.09/pr_1187/563649

date	job status	comment
Sep 29 10:09:06 UTC 2025	submitted	job id `563649` awaits release by job manager
Sep 29 10:09:31 UTC 2025	released	job awaits launch by Slurm scheduler
Sep 29 10:10:34 UTC 2025	running	job `563649` is running
Sep 29 13:48:07 UTC 2025	finished	😢 FAILURE (click triangle for details) Details ✅ job output file `slurm-563649.out` ✅ no message matching `FATAL:` ❌ found message matching `ERROR:` ❌ found message matching `FAILED:` ❌ found message matching `required modules missing:` ❌ no message matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17591533170.tar.gz` size: 80 MiB (84011637 bytes) entries: 21567 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `Armadillo/11.4.3-foss-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `Catch2/2.13.9-GCCcore-12.2.0.lua` `Eigen/3.4.0-GCCcore-12.2.0.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `HDF5/1.14.0-gompi-2022b.lua` `Highway/1.0.3-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Szip/2.1.1-GCCcore-12.2.0.lua` `arpack-ng/3.8.0-foss-2022b.lua` `gfbf/2022b.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `googletest/1.12.1-GCCcore-12.2.0.lua` `gzip/1.12-GCCcore-12.2.0.lua` `hypothesis/6.68.2-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `lz4/1.9.4-GCCcore-12.2.0.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `pybind11/2.10.3-GCCcore-12.2.0.lua` `zstd/1.5.2-GCCcore-12.2.0.lua` software under 2023.06/software/linux/aarch64/a64fx/software `Armadillo/11.4.3-foss-2022b` `Boost/1.81.0-GCC-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `Catch2/2.13.9-GCCcore-12.2.0` `Eigen/3.4.0-GCCcore-12.2.0` `GEOS/3.11.1-GCC-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `HDF5/1.14.0-gompi-2022b` `Highway/1.0.3-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Szip/2.1.1-GCCcore-12.2.0` `arpack-ng/3.8.0-foss-2022b` `gfbf/2022b` `giflib/5.2.1-GCCcore-12.2.0` `googletest/1.12.1-GCCcore-12.2.0` `gzip/1.12-GCCcore-12.2.0` `hypothesis/6.68.2-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `lz4/1.9.4-GCCcore-12.2.0` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `pybind11/2.10.3-GCCcore-12.2.0` `zstd/1.5.2-GCCcore-12.2.0` reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
Sep 29 13:48:07 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 2/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 3/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 4/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] ( 5/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_a64fx+default P: perf: 580.665 timesteps/s (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 564.163 timesteps/s (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.64 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.72 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8754.18 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8734.54 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 6/10 test case(s) from 10 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-563649.out` ❌ found message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`

bedroge · 2025-09-30T18:08:10Z

Confirmed: with armv8.2-a+sve the same 11 tests fail. So we can either ignore the failing tests or build without sve support.

edit: maybe I should try SciPy itself as well with both approaches.

Scipy built with --optarch="march=armv8.2-a" has two failing tests:
FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139 - AssertionError: linprog status 4, message: The solution does not satisfy the constraints within the...
FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139 - AssertionError: linprog status 4, message: The solution does not satisfy the constraints wi...

Also tried this with --ignore-test-failure to check how many SciPy tests would fail for an optimized build:

3282 failed, 44531 passed, 2343 skipped, 139 xfailed, 11 xpassed, 61
errors in 4431.68s (1:13:51)

😲 So I think we should proceed with the less optimized version 😆

easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2022b.yml

bedroge · 2025-10-04T12:07:59Z

I think this one has some overlap with #1177 (edit: and #1218), so let's do that one first.

bedroge · 2025-10-07T08:59:57Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

eessi-bot-deucalion · 2025-10-07T09:00:05Z

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.10/pr_1187/578972

date	job status	comment
Oct 07 09:00:04 UTC 2025	submitted	job id `578972` awaits release by job manager
Oct 07 09:00:09 UTC 2025	released	job awaits launch by Slurm scheduler
Oct 07 09:01:11 UTC 2025	running	job `578972` is running
Oct 09 09:02:47 UTC 2025	finished	🤷 UNKNOWN (click triangle for detailed information) Job results file `_bot_job578972.result` does not exist in job directory, or parsing it failed. No artefacts were found/reported.
Oct 09 09:02:47 UTC 2025	test result	🤷 UNKNOWN (click triangle for detailed information) Job test file `_bot_job578972.test` does not exist in job directory, or parsing it failed.

easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2022b.yml

bedroge · 2025-10-09T09:03:00Z

bot: build repo:eessi.io-2023.06-software instance:eessi-bot-deucalion for:arch=aarch64/a64fx

eessi-bot-deucalion · 2025-10-09T09:03:09Z

New job on instance eessi-bot-deucalion for repository eessi.io-2023.06-software
Building on: a64fx
Building for: aarch64/a64fx
Job dir: /home/eessibot/new-bot/jobs/2025.10/pr_1187/580995

date	job status	comment
Oct 09 09:03:08 UTC 2025	submitted	job id `580995` awaits release by job manager
Oct 09 09:03:51 UTC 2025	released	job awaits launch by Slurm scheduler
Oct 09 09:04:53 UTC 2025	running	job `580995` is running
Oct 09 23:13:48 UTC 2025	finished	😁 SUCCESS (click triangle for details) Details ✅ job output file `slurm-580995.out` ✅ no message matching `FATAL:` ✅ no message matching `ERROR:` ✅ no message matching `FAILED:` ✅ no message matching `required modules missing:` ✅ found message(s) matching `No missing installations` ✅ found message matching `.tar.gz created!` Artefacts `eessi-2023.06-software-linux-aarch64-a64fx-17600510120.tar.gz` size: 814 MiB (853947272 bytes) entries: 62489 modules under 2023.06/software/linux/aarch64/a64fx/modules/all `ATK/2.38.0-GCCcore-12.2.0.lua` `Armadillo/11.4.3-foss-2022b.lua` `Boost.MPI/1.81.0-gompi-2022b.lua` `Boost/1.81.0-GCC-12.2.0.lua` `Brunsli/0.1-GCCcore-12.2.0.lua` `CFITSIO/4.2.0-GCCcore-12.2.0.lua` `FriBidi/1.0.12-GCCcore-12.2.0.lua` `GDAL/3.6.2-foss-2022b.lua` `GEOS/3.11.1-GCC-12.2.0.lua` `GTK3/3.24.35-GCCcore-12.2.0.lua` `Gdk-Pixbuf/2.42.10-GCCcore-12.2.0.lua` `Ghostscript/10.0.0-GCCcore-12.2.0.lua` `HDF/4.2.15-GCCcore-12.2.0.lua` `ImageMagick/7.1.0-53-GCCcore-12.2.0.lua` `Imath/3.1.6-GCCcore-12.2.0.lua` `LERC/4.0.0-GCCcore-12.2.0.lua` `LibTIFF/4.4.0-GCCcore-12.2.0.lua` `LittleCMS/2.14-GCCcore-12.2.0.lua` `OpenEXR/3.1.5-GCCcore-12.2.0.lua` `OpenJPEG/2.5.0-GCCcore-12.2.0.lua` `PCRE/8.45-GCCcore-12.2.0.lua` `PROJ/9.1.1-GCCcore-12.2.0.lua` `Pango/1.50.12-GCCcore-12.2.0.lua` `Qhull/2020.2-GCCcore-12.2.0.lua` `WRF/4.4.1-foss-2022b-dmpar.lua` `Xerces-C++/3.2.4-GCCcore-12.2.0.lua` `arpack-ng/3.8.0-foss-2022b.lua` `at-spi2-atk/2.38.0-GCCcore-12.2.0.lua` `at-spi2-core/2.46.0-GCCcore-12.2.0.lua` `giflib/5.2.1-GCCcore-12.2.0.lua` `jbigkit/2.1-GCCcore-12.2.0.lua` `json-c/0.16-GCCcore-12.2.0.lua` `libdeflate/1.15-GCCcore-12.2.0.lua` `libepoxy/1.5.10-GCCcore-12.2.0.lua` `libgeotiff/1.7.1-GCCcore-12.2.0.lua` `libtirpc/1.3.3-GCCcore-12.2.0.lua` `netCDF-Fortran/4.6.0-gompi-2022b.lua` `netCDF/4.9.0-gompi-2022b.lua` `nlohmann_json/3.11.2-GCCcore-12.2.0.lua` `tcsh/6.24.07-GCCcore-12.2.0.lua` `time/1.9-GCCcore-12.2.0.lua` `waLBerla/6.1-foss-2022b.lua` software under 2023.06/software/linux/aarch64/a64fx/software `ATK/2.38.0-GCCcore-12.2.0` `Armadillo/11.4.3-foss-2022b` `Boost.MPI/1.81.0-gompi-2022b` `Boost/1.81.0-GCC-12.2.0` `Brunsli/0.1-GCCcore-12.2.0` `CFITSIO/4.2.0-GCCcore-12.2.0` `FriBidi/1.0.12-GCCcore-12.2.0` `GDAL/3.6.2-foss-2022b` `GEOS/3.11.1-GCC-12.2.0` `GTK3/3.24.35-GCCcore-12.2.0` `Gdk-Pixbuf/2.42.10-GCCcore-12.2.0` `Ghostscript/10.0.0-GCCcore-12.2.0` `HDF/4.2.15-GCCcore-12.2.0` `ImageMagick/7.1.0-53-GCCcore-12.2.0` `Imath/3.1.6-GCCcore-12.2.0` `LERC/4.0.0-GCCcore-12.2.0` `LibTIFF/4.4.0-GCCcore-12.2.0` `LittleCMS/2.14-GCCcore-12.2.0` `OpenEXR/3.1.5-GCCcore-12.2.0` `OpenJPEG/2.5.0-GCCcore-12.2.0` `PCRE/8.45-GCCcore-12.2.0` `PROJ/9.1.1-GCCcore-12.2.0` `Pango/1.50.12-GCCcore-12.2.0` `Qhull/2020.2-GCCcore-12.2.0` `WRF/4.4.1-foss-2022b-dmpar` `Xerces-C++/3.2.4-GCCcore-12.2.0` `arpack-ng/3.8.0-foss-2022b` `at-spi2-atk/2.38.0-GCCcore-12.2.0` `at-spi2-core/2.46.0-GCCcore-12.2.0` `giflib/5.2.1-GCCcore-12.2.0` `jbigkit/2.1-GCCcore-12.2.0` `json-c/0.16-GCCcore-12.2.0` `libdeflate/1.15-GCCcore-12.2.0` `libepoxy/1.5.10-GCCcore-12.2.0` `libgeotiff/1.7.1-GCCcore-12.2.0` `libtirpc/1.3.3-GCCcore-12.2.0` `netCDF-Fortran/4.6.0-gompi-2022b` `netCDF/4.9.0-gompi-2022b` `nlohmann_json/3.11.2-GCCcore-12.2.0` `tcsh/6.24.07-GCCcore-12.2.0` `time/1.9-GCCcore-12.2.0` `waLBerla/6.1-foss-2022b` reprod directories under 2023.06/software/linux/aarch64/a64fx/reprod no reprod directories in tarball other under 2023.06/software/linux/aarch64/a64fx no other files in tarball
Oct 09 23:13:48 UTC 2025	test result	😁 SUCCESS (click triangle for details) ReFrame Summary [ SKIP ] ( 1/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 2/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 3/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ SKIP ] ( 4/10) Skipping test: nodes in this partition only have 30720 MiB memory available (per node) accodring to the current ReFrame configuration, but 49152 MiB is needed [ OK ] ( 5/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/29Aug2024-foss-2023b-kokkos %scale=1_node /aeb2d9df @BotBuildTests:aarch64_a64fx+default P: perf: 574.269 timesteps/s (r:0, l:None, u:None) [ OK ] ( 6/10) EESSI_LAMMPS_lj %device_type=cpu %module_name=LAMMPS/2Aug2023_update2-foss-2023a-kokkos %scale=1_node /04ff9ece @BotBuildTests:aarch64_a64fx+default P: perf: 585.237 timesteps/s (r:0, l:None, u:None) [ OK ] ( 7/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /15cad6c4 @BotBuildTests:aarch64_a64fx+default P: latency: 1.69 us (r:0, l:None, u:None) [ OK ] ( 8/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_latency %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /6672deda @BotBuildTests:aarch64_a64fx+default P: latency: 1.7 us (r:0, l:None, u:None) [ OK ] ( 9/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.2-gompi-2023b %scale=1_node /2a9a47b1 @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8710.19 MB/s (r:0, l:None, u:None) [ OK ] (10/10) EESSI_OSU_pt2pt_CPU %benchmark_info=mpi.pt2pt.osu_bw %module_name=OSU-Micro-Benchmarks/7.1-1-gompi-2023a %scale=1_node /1b24ab8e @BotBuildTests:aarch64_a64fx+default P: bandwidth: 8642.46 MB/s (r:0, l:None, u:None) [ PASSED ] Ran 6/10 test case(s) from 10 check(s) (0 failure(s), 4 skipped, 0 aborted) Details ✅ job output file `slurm-580995.out` ✅ no message matching `ERROR:` ✅ no message matching `[\sFAILED\s].Ran . test case`
Oct 10 07:37:48 UTC 2025	uploaded	transfer of `eessi-2023.06-software-linux-aarch64-a64fx-17600510120.tar.gz` to S3 bucket succeeded

bedroge

Lgtm

bedroge · 2025-10-10T08:08:36Z

Staging PR merged, tarball has been ingested.

adding easystack file

2e19a77

Update eessi-2023.06-eb-4.9.4-2022b.yml

859a142

removing Harfbuzz as it depends on rust

Merge branch 'main' into a64fx-eb-490

cbd9898

hvelab mentioned this pull request Sep 29, 2025

Notes on building the stack for Fujitsu A64FX #1024

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Update eessi-2023.06-eb-4.9.4-2022b.yml

afb0657

remove scipy to split it into another PR

Merge branch 'main' into a64fx-eb-490

1e7fc45

bedroge mentioned this pull request Oct 3, 2025

Hooks for failing SciPy-Bundle 2023.02 tests on A64FX EESSI/software-layer-scripts#100

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bedroge reviewed Oct 3, 2025

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easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2022b.yml Outdated Show resolved Hide resolved

enable SciPy-bundle build

0a2854e

bedroge mentioned this pull request Oct 4, 2025

{2023.06}[2022b,a64fx] SciPy-bundle 2023.02 and Highway 1.0.3 #1217

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Merge branch 'main' into a64fx-eb-490

2a957fc

trz42 added the a64fx label Oct 7, 2025

bedroge reviewed Oct 9, 2025

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easystacks/software.eessi.io/2023.06/a64fx/eessi-2023.06-eb-4.9.4-2022b.yml Outdated Show resolved Hide resolved

disable R

a35cb4c

bedroge added the ready-to-deploy Mark a PR as ready to deploy label Oct 10, 2025

bedroge approved these changes Oct 10, 2025

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bedroge added bot:deploy Ask bot to deploy missing software installations to EESSI and removed ready-to-deploy Mark a PR as ready to deploy labels Oct 10, 2025

bedroge merged commit 01ea5e7 into EESSI:main Oct 10, 2025
50 checks passed

bedroge mentioned this pull request Oct 10, 2025

{2023.06}[2022b,a64fx] R 4.2.2 #1230

Merged

{2023.06}[2022b,a64fx] apps originally built with EB 4.9.0 #1187

{2023.06}[2022b,a64fx] apps originally built with EB 4.9.0 #1187

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