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{2025.06} foss/2024a #1158

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@boegel
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@boegel boegel commented Aug 21, 2025

Will need merge conflict fix after merging of:

@boegel boegel added the 2025.06-software.eessi.io 2025.06 version of software.eessi.io label Aug 21, 2025
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boegel commented Aug 21, 2025

bot: build repo:eessi.io-2025.06-software instance:eessi-bot-mc-aws arch:x86_64/amd/zen2
bot: build repo:eessi.io-2025.06-software instance:eessi-bot-jsc architecture:aarch64/nvidia/grace

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eessi-bot-aws bot commented Aug 21, 2025 •
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New job on instance eessi-bot-mc-aws for CPU micro-architecture x86_64-amd-zen2 for repository eessi.io-2025.06-software in job dir /project/def-users/SHARED/jobs/2025.08/pr_1158/84505

date job status comment
Aug 21 21:26:34 UTC 2025 submitted job id 84505 awaits release by job manager
Aug 21 21:27:30 UTC 2025 released job awaits launch by Slurm scheduler
Aug 21 21:32:34 UTC 2025 running job 84505 is running
Aug 22 02:39:47 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-84505.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-x86_64-amd-zen2-17558302530.tar.gzsize: 314 MiB (330213542 bytes)
entries: 25624
modules under 2025.06/software/linux/x86_64/amd/zen2/modules/all
BLIS/1.0-GCC-13.3.0.lua
CMake/3.29.3-GCCcore-13.3.0.lua
cURL/8.7.1-GCCcore-13.3.0.lua
FFTW/3.3.10-GCC-13.3.0.lua
FlexiBLAS/3.4.4-GCC-13.3.0.lua
hwloc/2.10.0-GCCcore-13.3.0.lua
libarchive/3.7.4-GCCcore-13.3.0.lua
libevent/2.1.12-GCCcore-13.3.0.lua
libfabric/1.21.0-GCCcore-13.3.0.lua
libffi/3.4.5-GCCcore-13.3.0.lua
libpciaccess/0.18.1-GCCcore-13.3.0.lua
libxml2/2.12.7-GCCcore-13.3.0.lua
make/4.4.1-GCCcore-13.3.0.lua
Meson/1.4.0-GCCcore-13.3.0.lua
Ninja/1.12.1-GCCcore-13.3.0.lua
numactl/2.0.18-GCCcore-13.3.0.lua
OpenBLAS/0.3.27-GCC-13.3.0.lua
OpenSSL/3.lua
Perl/5.38.0.lua
Perl/5.38.2-GCCcore-13.3.0.lua
pkgconf/1.8.0.lua
pkgconf/2.2.0-GCCcore-13.3.0.lua
PMIx/5.0.2-GCCcore-13.3.0.lua
PRRTE/3.0.5-GCCcore-13.3.0.lua
Python/3.12.3-GCCcore-13.3.0.lua
SQLite/3.45.3-GCCcore-13.3.0.lua
Tcl/8.6.14-GCCcore-13.3.0.lua
UCC/1.3.0-GCCcore-13.3.0.lua
UCX/1.16.0-GCCcore-13.3.0.lua
UnZip/6.0-GCCcore-13.3.0.lua
xorg-macros/1.20.1-GCCcore-13.3.0.lua
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CMake/3.29.3-GCCcore-13.3.0
cURL/8.7.1-GCCcore-13.3.0
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make/4.4.1-GCCcore-13.3.0
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pkgconf/1.8.0/
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PMIx/5.0.2-GCCcore-13.3.0/
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PRRTE/3.0.5-GCCcore-13.3.0/20250822_022244UTC
Python/3.12.3-GCCcore-13.3.0/
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SQLite/3.45.3-GCCcore-13.3.0/
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UCC/1.3.0-GCCcore-13.3.0/
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xorg-macros/1.20.1-GCCcore-13.3.0/20250822_020839UTC
other under 2025.06/software/linux/x86_64/amd/zen2
no other files in tarball
Aug 22 02:39:47 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-84505.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

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eessi-bot-jsc bot commented Aug 21, 2025 •
edited
Loading

New job on instance eessi-bot-jsc for CPU micro-architecture aarch64-nvidia-grace for repository eessi.io-2025.06-software in job dir /p/project1/ceasybuilders/eessibot/jobs/2025.08/pr_1158/14011773

date job status comment
Aug 21 21:26:35 UTC 2025 submitted job id 14011773 awaits release by job manager
Aug 21 21:27:24 UTC 2025 released job awaits launch by Slurm scheduler
Aug 21 21:28:27 UTC 2025 running job 14011773 is running
Aug 21 23:10:51 UTC 2025 finished
😢 FAILURE (click triangle for details)
Details
✅ job output file slurm-14011773.out
✅ no message matching FATAL:
❌ found message matching ERROR:
❌ found message matching FAILED:
❌ found message matching required modules missing:
❌ no message matching No missing installations
✅ found message matching .tar.gz created!
Artefacts
eessi-2025.06-software-linux-aarch64-nvidia-grace-17558175690.tar.gzsize: 300 MiB (314914678 bytes)
entries: 25594
modules under 2025.06/software/linux/aarch64/nvidia/grace/modules/all
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CMake/3.29.3-GCCcore-13.3.0.lua
cURL/8.7.1-GCCcore-13.3.0.lua
FFTW/3.3.10-GCC-13.3.0.lua
FlexiBLAS/3.4.4-GCC-13.3.0.lua
hwloc/2.10.0-GCCcore-13.3.0.lua
libarchive/3.7.4-GCCcore-13.3.0.lua
libevent/2.1.12-GCCcore-13.3.0.lua
libfabric/1.21.0-GCCcore-13.3.0.lua
libffi/3.4.5-GCCcore-13.3.0.lua
libpciaccess/0.18.1-GCCcore-13.3.0.lua
libxml2/2.12.7-GCCcore-13.3.0.lua
make/4.4.1-GCCcore-13.3.0.lua
Meson/1.4.0-GCCcore-13.3.0.lua
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numactl/2.0.18-GCCcore-13.3.0.lua
OpenBLAS/0.3.27-GCC-13.3.0.lua
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pkgconf/1.8.0.lua
pkgconf/2.2.0-GCCcore-13.3.0.lua
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PRRTE/3.0.5-GCCcore-13.3.0.lua
Python/3.12.3-GCCcore-13.3.0.lua
SQLite/3.45.3-GCCcore-13.3.0.lua
Tcl/8.6.14-GCCcore-13.3.0.lua
UCC/1.3.0-GCCcore-13.3.0.lua
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UnZip/6.0-GCCcore-13.3.0.lua
xorg-macros/1.20.1-GCCcore-13.3.0.lua
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CMake/3.29.3-GCCcore-13.3.0
cURL/8.7.1-GCCcore-13.3.0
FFTW/3.3.10-GCC-13.3.0
FlexiBLAS/3.4.4-GCC-13.3.0
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libarchive/3.7.4-GCCcore-13.3.0
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libffi/3.4.5-GCCcore-13.3.0
libpciaccess/0.18.1-GCCcore-13.3.0
libxml2/2.12.7-GCCcore-13.3.0
make/4.4.1-GCCcore-13.3.0
Meson/1.4.0-GCCcore-13.3.0
Ninja/1.12.1-GCCcore-13.3.0
numactl/2.0.18-GCCcore-13.3.0
OpenBLAS/0.3.27-GCC-13.3.0
OpenSSL/3
Perl/5.38.0
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UCC/1.3.0-GCCcore-13.3.0
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pkgconf/1.8.0/
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PRRTE/3.0.5-GCCcore-13.3.0/20250821_230013UTC
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Python/3.12.3-GCCcore-13.3.0/20250821_221434UTC
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SQLite/3.45.3-GCCcore-13.3.0/20250821_220346UTC
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UCC/1.3.0-GCCcore-13.3.0/20250821_225529UTC
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xorg-macros/1.20.1-GCCcore-13.3.0/20250821_225534UTC
other under 2025.06/software/linux/aarch64/nvidia/grace
no other files in tarball
Aug 21 23:10:51 UTC 2025 test result
😢 FAILURE (click triangle for details)
Reason
EESSI test suite was not run, test step itself failed to execute.
Details
✅ job output file slurm-14011773.out
❌ found message matching ERROR:
✅ no message matching [\s*FAILED\s*].*Ran .* test case

@boegel boegel mentioned this pull request Aug 22, 2025
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boegel commented Aug 22, 2025 •
edited
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For both zen2 and grace, build of OpenMPI/5.0.3-GCC-13.3.0 failed...

Will figure out more details.

Fleshed out working builds to:

@boegel
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boegel commented Aug 22, 2025 •
edited
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OpenMPI failed with:

Making all in include
make[2]: Entering directory '/tmp/eessibot/easybuild/build/OpenMPI/5.0.3/GCC-13.3.0/openmpi-5.0.3/ompi/include'
 cd ../.. && /bin/bash /tmp/eessibot/easybuild/build/OpenMPI/5.0.3/GCC-13.3.0/openmpi-5.0.3/config/missing automake-1.16 --foreign ompi/include/Makefile
/tmp/eessibot/easybuild/build/OpenMPI/5.0.3/GCC-13.3.0/openmpi-5.0.3/config/missing: line 81: automake-1.16: command not found
WARNING: 'automake-1.16' is missing on your system.
         You should only need it if you modified 'Makefile.am' or
         'configure.ac' or m4 files included by 'configure.ac'.
         The 'automake' program is part of the GNU Automake package:
         <https://www.gnu.org/software/automake>
         It also requires GNU Autoconf, GNU m4 and Perl in order to run:
         <https://www.gnu.org/software/autoconf>
         <https://www.gnu.org/software/m4/>
         <https://www.perl.org/>
make[2]: *** [Makefile:1492: Makefile.in] Error 127
make[2]: Leaving directory '/tmp/eessibot/easybuild/build/OpenMPI/5.0.3/GCC-13.3.0/openmpi-5.0.3/ompi/include'
make[1]: *** [Makefile:2799: all-recursive] Error 1
make[1]: Leaving directory '/tmp/eessibot/easybuild/build/OpenMPI/5.0.3/GCC-13.3.0/openmpi-5.0.3/ompi'
make: *** [Makefile:1533: all-recursive] Error 1

So it's basically not happy with the automake we have in the EESSI 2025.06 compat layer... sigh

@bedroge
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bedroge commented Aug 25, 2025

So it's basically not happy with the automake we have in the EESSI 2025.06 compat layer... sigh

See https://gitlab.com/eessi/support/-/issues/56#note_2551021911.

@boegel
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boegel commented Aug 25, 2025

So either we run autogen.pl via preconfigopts to fix the problem, or we stop filtering Automake & co and rely on them as build dependencies provided by EasyBuild rather than coming from the compat layer.

@bedroge Which option do you prefer?

@bedroge
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bedroge commented Aug 26, 2025

So either we run autogen.pl via preconfigopts to fix the problem, or we stop filtering Automake & co and rely on them as build dependencies provided by EasyBuild rather than coming from the compat layer.

@bedroge Which option do you prefer?

No strong preference, but I think I'd remove it from the filtered dependencies and rely on the versions provided by EB.

@boegel
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boegel commented Aug 26, 2025

So either we run autogen.pl via preconfigopts to fix the problem, or we stop filtering Automake & co and rely on them as build dependencies provided by EasyBuild rather than coming from the compat layer.
@bedroge Which option do you prefer?

No strong preference, but I think I'd remove it from the filtered dependencies and rely on the versions provided by EB.

PR to change this:

@ocaisa
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ocaisa commented Aug 27, 2025

We need to add a hook to enable --enable-ipv6 for OpenMPI (or make a PR upstream and use that)

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ocaisa commented Sep 24, 2025

foss/2024a merged via #1164

@ocaisa ocaisa closed this Sep 24, 2025
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@boegel @bedroge @ocaisa