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Merged
merged 5 commits into from
Apr 14, 2025
Merged

{2023.06}[2022b,grace] apps originally built with EB 4.9.0 #1013

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9818b0f
{2023.06}[2022b,grace] apps originally built with EB 4.9.0
truib Apr 8, 2025
926aa43
Merge branch '2023.06-software.eessi.io' of github-trz:EESSI/software…
truib Apr 8, 2025
e476faf
skip some tests building Highway/1.0.3 on NVIDIA Grace
truib Apr 8, 2025
4151b6b
tolerate failing tests for SciPy-bundle-2023.02 on NVIDIA Grace
truib Apr 8, 2025
e64207f
Merge branch '2023.06-software.eessi.io' of github-trz:EESSI/software…
truib Apr 13, 2025
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50 changes: 50 additions & 0 deletions easystacks/software.eessi.io/2023.06/grace/eessi-2023.06-eb-4.9.4-2022b.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -37,3 +37,53 @@ easyconfigs:
# easyconfigs (via EB 4.9.4) didn't work, and wasn't done for any of the other
# supported CPU microarchitectures. Hence, we build QE with 4.8.2
# - QuantumESPRESSO-7.2-foss-2022b.eb
#
# from here on built originally with EB 4.9.0
# includes dependencies Boost/1.81.0 and Boost.MPI/1.81.0 for which we have to
# use updated easyconfigs (via from-commit) because the download URLs have
# changed
#
# originally built with EB 4.9.0, PR 20298 was included since 4.9.2 and no more
# updates to it since then
# - Highway-1.0.3-GCCcore-12.2.0.eb:
# options:
# from-pr: 20298
- Highway-1.0.3-GCCcore-12.2.0.eb
- SciPy-bundle-2023.02-gfbf-2022b.eb
# Boost-1.81.0-GCC-12.2.0.eb is a dependency for GDAL and the sources URL for Boost
# has recently changed by PR 22157
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/22157
- Boost-1.81.0-GCC-12.2.0.eb:
options:
from-commit: 5bebccf792ccf35a8ee3250bc8fed86dff5d5df9
- GDAL-3.6.2-foss-2022b.eb
# originally built with EB 4.9.0, PR 19324 was included since 4.9.1; there were a
# few additional changes to the easyconfig, hence we use the merge commit for 19324
# - waLBerla-6.1-foss-2022b.eb:
# options:
# from-pr: 19324
# Boost.MPI-1.81.0-gompi-2022b.eb is a dependency for waLBerla and the sources URL for
# Boost.MPI has recently changed by PR 22240
# see https://github.com/easybuilders/easybuild-easyconfigs/pull/22240
- Boost.MPI-1.81.0-gompi-2022b.eb:
options:
from-commit: e610fe1ac5393d1de668a466fdaaea74c580ee03
- waLBerla-6.1-foss-2022b.eb:
options:
from-commit: 11daa230014b22387c28712d2ce93c45618058f6
- WRF-4.4.1-foss-2022b-dmpar.eb
# originally built with EB 4.9.0, PR 20086 was included since 4.9.1; there were a
# few additional changes to the easyconfig, hence we use the merge commit for 20086
# - ImageMagick-7.1.0-53-GCCcore-12.2.0.eb:
# options:
# from-pr: 20086
- ImageMagick-7.1.0-53-GCCcore-12.2.0.eb:
options:
from-commit: a0eff4515ecad4fe37d7c018c95526ad4a777de7
# originally built with EB 4.9.0, PR 20238 was included since 4.9.1; there were
# additional changes, particularly addressing CVE 2024-27322 that was included
# since EB 4.9.2, hence we simply use the easyconfig available with EB 4.9.4
# - R-4.2.2-foss-2022b.eb:
# options:
# from-pr: 20238
- R-4.2.2-foss-2022b.eb
57 changes: 56 additions & 1 deletion eb_hooks.py
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Original file line number Diff line number Diff line change
Expand Up @@ -749,10 +749,17 @@ def pre_test_hook_exclude_failing_test_Highway(self, *args, **kwargs):
"""
Pre-test hook for Highway: exclude failing TestAllShiftRightLanes/SVE_256 test on neoverse_v1
cfr. https://github.com/EESSI/software-layer/issues/469
and exclude failing tests
HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE2_128
HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE2
HwyReductionTestGroup/HwyReductionTest.TestAllSumOfLanes/SVE
on nvidia/grace
"""
cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
if self.name == 'Highway' and self.version in ['1.0.3'] and cpu_target == CPU_TARGET_NEOVERSE_V1:
self.cfg['runtest'] += ' ARGS="-E TestAllShiftRightLanes/SVE_256"'
if self.name == 'Highway' and self.version in ['1.0.3'] and cpu_target == CPU_TARGET_NVIDIA_GRACE:
self.cfg['runtest'] += ' ARGS="-E TestAllSumOfLanes"'


def pre_test_hook_ignore_failing_tests_ESPResSo(self, *args, **kwargs):
Expand Down Expand Up @@ -795,12 +802,60 @@ def pre_test_hook_ignore_failing_tests_SciPybundle(self, *args, **kwargs):
FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
FAILED scipy/optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
= 2 failed, 54876 passed, 3021 skipped, 223 xfailed, 13 xpassed in 581.85s (0:09:41) =
In version 2023.02 on grace, 46 failing tests in scipy (versions 1.10.1):
FAILED ../../linalg/tests/test_basic.py::TestOverwrite::test_pinv - RuntimeWa...
FAILED ../../linalg/tests/test_basic.py::TestOverwrite::test_pinvh - RuntimeW...
FAILED ../../linalg/tests/test_matfuncs.py::TestExpM::test_2x2_input - Runtim...
FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparse::test_bug_6139
FAILED ../../optimize/tests/test_linprog.py::TestLinprogIPSparsePresolve::test_bug_6139
FAILED ../../optimize/tests/test_zeros.py::test_gh_9608_preserve_array_shape
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-coo_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-array-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-csr_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-False-coo_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-array-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-csr_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-True-coo_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-array-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-array-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[True-True-True-csr_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-False-True-float32-coo_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-csr_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-True-True-True-float32-coo_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-False-True-float32-coo_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_asymmetric_laplacian[False-True-False-coo_matrix-float32]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-False-True-float32-coo_matrix]
FAILED ../../sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py::test_tolerance_float32
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-False-True-float32-coo_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-True-True-True-float32-coo_matrix]
FAILED ../../sparse/linalg/_eigen/lobpcg/tests/test_lobpcg.py::test_random_initial_float32
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[function-False-True-True-float32-coo_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-asarray]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-csr_matrix]
FAILED ../../sparse/csgraph/tests/test_graph_laplacian.py::test_format[lo-False-True-True-float32-coo_matrix]
FAILED ../../sparse/linalg/_isolve/tests/test_iterative.py::test_precond_dummy
FAILED ../../sparse/linalg/_eigen/arpack/tests/test_arpack.py::test_symmetric_modes
= 46 failed, 49971 passed, 2471 skipped, 231 xfailed, 11 xpassed in 65.91s (0:01:05) =
(in previous versions we were not as strict yet on the numpy/SciPy tests)
"""
cpu_target = get_eessi_envvar('EESSI_SOFTWARE_SUBDIR')
scipy_bundle_versions_nv1 = ('2021.10', '2023.02', '2023.07', '2023.11')
scipy_bundle_versions_a64fx = ('2023.07', '2023.11')
scipy_bundle_versions_nvidia_grace = ('2023.07', '2023.11')
scipy_bundle_versions_nvidia_grace = ('2023.02', '2023.07', '2023.11')
if self.name == 'SciPy-bundle':
if cpu_target == CPU_TARGET_NEOVERSE_V1 and self.version in scipy_bundle_versions_nv1:
self.cfg['testopts'] = "|| echo ignoring failing tests"
Expand Down