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Update intro tutorial, add C2, cleanup show plots
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gallery/tutorials/aspire_introduction.py

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@@ -597,16 +597,20 @@ def noise_function(x, y):
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# %%
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# Clean projections.
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sim.projections[:5].show()
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sim.projections[:3].show()
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# %%
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# Images with only CTF applied.
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sim.clean_images[:5].show()
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sim.clean_images[:3].show()
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# %%
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# The first five corrupted images.
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sim.images[:5].show()
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# And now the first four corrupted images.
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sim.images[:4].show(columns=2, colorbar=False)
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# %%
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# .. note::
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# Above the ``show`` call has been customized as a 2 column grid
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# with out colorbar legend.
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# %%
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# Real Experimental Data - ``RelionSource``
@@ -658,13 +662,13 @@ def noise_function(x, y):
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# +================+====================+=================+================+=====================+
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# |Simulation | NoiseEstimator | Class Averaging | CLSyncVoting | MeanVolumeEstimator |
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# +----------------+--------------------+-----------------+----------------+---------------------+
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# |RelionSource | downsample | cov2d (CWF) | CLSymmetryC3C4 | |
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# |RelionSource | downsample | cov2d (CWF) | CLSymmetryC2 | |
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# +----------------+--------------------+-----------------+----------------+---------------------+
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# |CoordinateSource| whiten | | CLSymmetryCn | |
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# |CoordinateSource| whiten | | CLSymmetryC3C4 | |
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# +----------------+--------------------+-----------------+----------------+---------------------+
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# | | phase_flip | | CommonlineSDP | |
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# | | phase_flip | | CLSymmetryCn | |
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# +----------------+--------------------+-----------------+----------------+---------------------+
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# | |normalize_background| | | |
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# | |normalize_background| | CommonlineSDP | |
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# +----------------+--------------------+-----------------+----------------+---------------------+
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# | | CTFEstimator | | | |
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# +----------------+--------------------+-----------------+----------------+---------------------+

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