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lines changed Original file line number Diff line number Diff line change 4141
4242n_imgs = None # Set to None for all images in starfile, can set smaller for tests.
4343img_size = 32 # Downsample the images/reconstruction to a desired resolution
44- n_classes = 2000 # How many class averages to compute.
44+ n_classes = 500 # How many class averages to compute.
4545n_nbor = 100 # How many neighbors to stack
4646starfile_in = "10081/data/particle_stacks/data.star"
4747data_folder = "." # This depends on the specific starfile entries.
116116# ----------------------
117117#
118118# Using the oriented source, attempt to reconstruct a volume.
119+ # Since this is a Cn symmetric molecule, as indicated by
120+ # ``symmetry="C4"`` above, the ``avgs`` images set will be repeated
121+ # for each of the 3 additional rotations during the back-projection
122+ # step. This boosts the effective number of images used in the
123+ # reconstruction from ``n_classes`` to ``4*n_classes``.
119124
120125logger .info ("Begin Volume reconstruction" )
121126
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