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Add minor boosting changes to 10081 gallery
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gallery/experiments/experimental_abinitio_pipeline_10081.py

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@@ -41,7 +41,7 @@
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n_imgs = None # Set to None for all images in starfile, can set smaller for tests.
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img_size = 32 # Downsample the images/reconstruction to a desired resolution
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n_classes = 2000 # How many class averages to compute.
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n_classes = 500 # How many class averages to compute.
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n_nbor = 100 # How many neighbors to stack
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starfile_in = "10081/data/particle_stacks/data.star"
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data_folder = "." # This depends on the specific starfile entries.
@@ -116,6 +116,11 @@
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# ----------------------
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#
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# Using the oriented source, attempt to reconstruct a volume.
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# Since this is a Cn symmetric molecule, as indicated by
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# ``symmetry="C4"`` above, the ``avgs`` images set will be repeated
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# for each of the 3 additional rotations during the back-projection
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# step. This boosts the effective number of images used in the
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# reconstruction from ``n_classes`` to ``4*n_classes``.
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logger.info("Begin Volume reconstruction")
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