replace gemmi loop.val method with updaated getter/setter syntax

j-c-c · garrettwrong · commit 2255efe3fa24 · 2024-02-22T11:33:41.000-05:00
diff --git a/src/aspire/storage/starfile.py b/src/aspire/storage/starfile.py
@@ -100,11 +100,10 @@ def _initialize_blocks(self):
                         )
                     loop_tags = gemmi_item.loop.tags
                     # convert loop data to a list of lists
-                    # using the .val(row, col) method of gemmi's Loop class
                     loop_data = [None] * gemmi_item.loop.length()
                     for row in range(gemmi_item.loop.length()):
                         loop_data[row] = [
-                            gemmi_item.loop.val(row, col)
+                            gemmi_item.loop[row, col]
                             for col in range(gemmi_item.loop.width())
                         ]
             if block_has_pair:

Original file line number	Diff line number	Diff line change
`@@ -100,11 +100,10 @@ def _initialize_blocks(self):`
`100`	`100`	`)`
`101`	`101`	`loop_tags = gemmi_item.loop.tags`
`102`	`102`	`# convert loop data to a list of lists`
`103`		`- # using the .val(row, col) method of gemmi's Loop class`
`104`	`103`	`loop_data = [None] * gemmi_item.loop.length()`
`105`	`104`	`for row in range(gemmi_item.loop.length()):`
`106`	`105`	`loop_data[row] = [`
`107`		`- gemmi_item.loop.val(row, col)`
	`106`	`+ gemmi_item.loop[row, col]`
`108`	`107`	`for col in range(gemmi_item.loop.width())`
`109`	`108`	`]`
`110`	`109`	`if block_has_pair:`