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[Hackathon] Add a temporary option for benchmark data. #695

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Nov 25, 2021
Merged

[Hackathon] Add a temporary option for benchmark data. #695

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d8bd0ec
Add a hackathon-specific argument for benchmarks.
olupton Nov 23, 2021
84a7f50
Add a reference comparison.
olupton Nov 25, 2021
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3 changes: 3 additions & 0 deletions CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -103,6 +103,9 @@ option(CORENRN_ENABLE_SHARED "Enable shared library build" ON)
option(CORENRN_ENABLE_LEGACY_UNITS "Enable legacy FARADAY, R, etc" OFF)
option(CORENRN_ENABLE_PRCELLSTATE "Enable NRN_PRCELLSTATE debug feature" OFF)

set(CORENRN_EXTERNAL_BENCHMARK_DATA
""
CACHE PATH "Path to input data files and mechanisms for benchmarks")
set(CORENRN_NMODL_DIR
""
CACHE PATH "Path to nmodl source-to-source compiler installation")
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30 changes: 29 additions & 1 deletion coreneuron/CMakeLists.txt
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Expand Up @@ -293,6 +293,33 @@ set_target_properties(
# =============================================================================
# create special-core with halfgap.mod for tests
# =============================================================================
set(all_output_binaries)
if(NOT ${CORENRN_EXTERNAL_BENCHMARK_DATA} STREQUAL "")
# Hack for the december 2021 hackathon, build an extra special-core with channel-benchmark
# mechanisms.
set(modfile_directory
"${CORENRN_EXTERNAL_BENCHMARK_DATA}/channel-benchmark/benchmark/channels/lib/modlib")
file(GLOB modfiles "${modfile_directory}/*.mod")
set(output_binaries "${CMAKE_BINARY_DIR}/benchmark/${CMAKE_SYSTEM_PROCESSOR}/special-core"
"${CMAKE_BINARY_DIR}/benchmark/${CMAKE_SYSTEM_PROCESSOR}/libcorenrnmech.a")
add_custom_command(
OUTPUT ${output_binaries}
DEPENDS scopmath coreneuron ${NMODL_TARGET_TO_DEPEND} ${modfiles} ${CORENEURON_BUILTIN_MODFILES}
COMMAND ${CMAKE_BINARY_DIR}/bin/nrnivmodl-core -b STATIC -m ${CORENRN_MOD2CPP_BINARY} -p 1
"${modfile_directory}"
WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/benchmark
COMMENT "Running nrnivmodl-core for channel-benchmark mechanisms")
list(APPEND all_output_binaries ${output_binaries})
string(
CONCAT
benchmark_command
"'${CMAKE_BINARY_DIR}/benchmark/${CMAKE_SYSTEM_PROCESSOR}/special-core'"
" --datpath '${CORENRN_EXTERNAL_BENCHMARK_DATA}/channel-benchmark-all-440-cells-2-ranks'"
" --tstop 1 &&"
"diff out.dat '${CORENRN_EXTERNAL_BENCHMARK_DATA}/channel-benchmark-all-440-cells-2-ranks.gpu.spikes'"
)
add_test(NAME benchmark COMMAND sh -c "${benchmark_command}")
endif()
set(modfile_directory "${CORENEURON_PROJECT_SOURCE_DIR}/tests/integration/ring_gap/mod")
file(GLOB modfiles "${modfile_directory}/*.mod")
set(output_binaries "${CMAKE_BINARY_DIR}/bin/${CMAKE_SYSTEM_PROCESSOR}/special-core"
Expand All @@ -304,7 +331,8 @@ add_custom_command(
"${modfile_directory}"
WORKING_DIRECTORY ${CMAKE_BINARY_DIR}/bin
COMMENT "Running nrnivmodl-core with halfgap.mod")
add_custom_target(nrniv-core ALL DEPENDS ${output_binaries})
list(APPEND all_output_binaries ${output_binaries})
add_custom_target(nrniv-core ALL DEPENDS ${all_output_binaries})

include_directories(${CORENEURON_PROJECT_SOURCE_DIR})

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