diff --git a/utils/update_checkout/update-checkout-config.json b/utils/update_checkout/update-checkout-config.json
index 003b8ab6bc274..dc7aef871ae32 100644
--- a/utils/update_checkout/update-checkout-config.json
+++ b/utils/update_checkout/update-checkout-config.json
@@ -161,7 +161,7 @@
                 "swift-corelibs-libdispatch": "main",
                 "swift-integration-tests": "main",
                 "swift-xcode-playground-support": "main",
-                "ninja": "v1.11.1",
+                "ninja": "v1.13.1",
                 "cmake": "v3.30.2",
                 "indexstore-db": "main",
                 "sourcekit-lsp": "main",
@@ -589,7 +589,7 @@
                 "swift-corelibs-libdispatch": "main",
                 "swift-integration-tests": "main",
                 "swift-xcode-playground-support": "main",
-                "ninja": "v1.11.1",
+                "ninja": "v1.13.1",
                 "cmake": "v3.30.2",
                 "indexstore-db": "main",
                 "sourcekit-lsp": "main",
@@ -647,7 +647,7 @@
                 "swift-corelibs-libdispatch": "main",
                 "swift-integration-tests": "main",
                 "swift-xcode-playground-support": "main",
-                "ninja": "v1.11.1",
+                "ninja": "v1.13.1",
                 "cmake": "v3.30.2",
                 "indexstore-db": "main",
                 "sourcekit-lsp": "main",