From 6fe5ecc313e6de9b09db796c459b4df103ddcebd Mon Sep 17 00:00:00 2001
From: Luca Marconato <m.lucalmer@gmail.com>
Date: Wed, 18 Dec 2024 17:08:32 +0100
Subject: [PATCH 1/5] added tests for plotting columns from points

---
 tests/pl/test_render_points.py | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/tests/pl/test_render_points.py b/tests/pl/test_render_points.py
index e3e99099..302eaea5 100644
--- a/tests/pl/test_render_points.py
+++ b/tests/pl/test_render_points.py
@@ -5,6 +5,7 @@
 import matplotlib.pyplot as plt
 import numpy as np
 import pandas as pd
+import pytest
 import scanpy as sc
 from anndata import AnnData
 from spatialdata import SpatialData, deepcopy
@@ -111,6 +112,14 @@ def test_plot_datashader_continuous_color(self, sdata_blobs: SpatialData):
             element="blobs_points", size=40, color="instance_id", alpha=0.6, method="datashader"
         ).pl.show()
 
+    @pytest.mark.parametrize("method", ["matplotlib", "datashader"])
+    def test_plot_points_categorical_color_column(self, sdata_blobs: SpatialData, method: str):
+        sdata_blobs.pl.render_points("blobs_points", color="genes", method=method).pl.show()
+
+    @pytest.mark.parametrize("method", ["matplotlib", "datashader"])
+    def test_plot_points_continuous_color_column(self, sdata_blobs: SpatialData, method: str):
+        sdata_blobs.pl.render_points("blobs_points", color="instance_id", method=method).pl.show()
+
     def test_plot_datashader_matplotlib_stack(self, sdata_blobs: SpatialData):
         sdata_blobs.pl.render_points(
             element="blobs_points", size=40, color="red", method="datashader"

From db06a99223e442dd058492e8f1d122ca39d9626f Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Wed, 18 Dec 2024 16:09:59 +0000
Subject: [PATCH 2/5] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 CHANGELOG.md         | 122 +++++++++++++++++++++----------------------
 README.md            |   4 +-
 docs/contributing.md |  18 +++----
 3 files changed, 72 insertions(+), 72 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 6973baa3..2cbc0c88 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -12,166 +12,166 @@ and this project adheres to [Semantic Versioning][].
 
 ### Fixed
 
--   Transformations of Points and Shapes are now applied before rendering with datashader (#378)
+- Transformations of Points and Shapes are now applied before rendering with datashader (#378)
 
 ## [0.2.8] - 2024-11-26
 
 ### Changed
 
--   Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
+- Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
 
 ## [0.2.7] - 2024-10-24
 
 ### Added
 
--   The user can now specify `datashader_reduction` to control the rendering behaviour (#309)
--   Rendering outlines of shapes with datashader works now (#309)
+- The user can now specify `datashader_reduction` to control the rendering behaviour (#309)
+- Rendering outlines of shapes with datashader works now (#309)
 
 ### Fixed
 
--   datashader now uses canvas size = image size which speeds up the rendering (#309)
--   datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
--   point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
--   Giving a custom colormap when rendering a multiscale image now works (#586)
+- datashader now uses canvas size = image size which speeds up the rendering (#309)
+- datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
+- point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
+- Giving a custom colormap when rendering a multiscale image now works (#586)
 
 ## [0.2.6] - 2024-09-04
 
 ### Changed
 
--   Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
--   When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
--   When rendering a single image channel, a colorbar is now shown (#346)
--   Removed `percentiles_for_norm` parameter (#346)
--   Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
+- Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
+- When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
+- When rendering a single image channel, a colorbar is now shown (#346)
+- Removed `percentiles_for_norm` parameter (#346)
+- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
 
 ### Fixed
 
--   Filtering with `groups` now preserves original cmap (#344)
--   Non-selected `groups` are now not shown in `na_color` (#344)
--   Several issues associated with `norm` and `colorbar` (#346)
+- Filtering with `groups` now preserves original cmap (#344)
+- Non-selected `groups` are now not shown in `na_color` (#344)
+- Several issues associated with `norm` and `colorbar` (#346)
 
 ## [0.2.5] - 2024-08-23
 
 ### Changed
 
--   Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
--   Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
--   Removed `preprocessing` (.pp) accessor (#329)
+- Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
+- Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
+- Removed `preprocessing` (.pp) accessor (#329)
 
 ### Fixed
 
--   Minor fixes for several tests as a result of the threshold change (#323)
+- Minor fixes for several tests as a result of the threshold change (#323)
 
 ## [0.2.4] - 2024-08-07
 
 ### Added
 
--   Added utils function for 0-transparent cmaps (#302)
+- Added utils function for 0-transparent cmaps (#302)
 
 ### Fixed
 
--   Took RNG out of categorical label test (#306)
--   Performance bug when plotting shapes (#298)
--   scale parameter was ignored for single-scale images (#301)
--   Changes to support for dask-expr (#283)
--   Added error handling for non-existent elements (#305)
--   Specifying vmin and vmax properly clips image data (#307)
--   import bug `get_cmap()` (8fd969c)
+- Took RNG out of categorical label test (#306)
+- Performance bug when plotting shapes (#298)
+- scale parameter was ignored for single-scale images (#301)
+- Changes to support for dask-expr (#283)
+- Added error handling for non-existent elements (#305)
+- Specifying vmin and vmax properly clips image data (#307)
+- import bug `get_cmap()` (8fd969c)
 
 ## [0.2.3] - 2024-07-03
 
 ### Added
 
--   Datashader support for points and shapes (#244)
+- Datashader support for points and shapes (#244)
 
 ### Changed
 
--   All parameters are now provided for a single element (#272)
+- All parameters are now provided for a single element (#272)
 
 ### Fixed
 
--   Fix color assignment for NaN values (#257)
--   Zorder of rendering now strictly follows the order of the render_x calls (#244)
+- Fix color assignment for NaN values (#257)
+- Zorder of rendering now strictly follows the order of the render_x calls (#244)
 
 ## [0.2.2] - 2024-05-02
 
 ### Fixed
 
--   Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
--   Fix channel str support (#221)
+- Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
+- Fix channel str support (#221)
 
 ## [0.2.1] - 2024-03-26
 
 ### Minor
 
--   Adjusted GitHub worklows
+- Adjusted GitHub worklows
 
 ## [0.2.0] - 2024-03-24
 
 ### Added
 
--   Support for plotting multiple tables @melonora
+- Support for plotting multiple tables @melonora
 
 ### Fixed
 
--   Several bugfixes, especially for colors and palettes @melonora
+- Several bugfixes, especially for colors and palettes @melonora
 
 ## [0.1.0] - 2024-01-17
 
 ### Added
 
--   Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
--   Large images are automatically rasterized to speed up performance (#164)
--   Added better error message for mismatch in cs and ax number (#185)
--   Beter test coverage for correct plotting of elements after transformation (#198)
--   Can now stack render commands (#190, #192)
--   The `color` argument in render_shapes/points now accepts actual colors as well (#199)
--   Input arguments are now evaulated for their types in basic.py (#199)
+- Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
+- Large images are automatically rasterized to speed up performance (#164)
+- Added better error message for mismatch in cs and ax number (#185)
+- Beter test coverage for correct plotting of elements after transformation (#198)
+- Can now stack render commands (#190, #192)
+- The `color` argument in render_shapes/points now accepts actual colors as well (#199)
+- Input arguments are now evaulated for their types in basic.py (#199)
 
 ### Fixed
 
--   Now dropping index when plotting shapes after spatial query (#177)
--   Points are now being correctly rotated (#198)
--   User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
+- Now dropping index when plotting shapes after spatial query (#177)
+- Points are now being correctly rotated (#198)
+- User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
 
 ## [0.0.6] - 2023-11-06
 
 ### Added
 
--   Pushed `get_extent` functionality upstream to `spatialdata` (#162)
+- Pushed `get_extent` functionality upstream to `spatialdata` (#162)
 
 ## [0.0.5] - 2023-10-02
 
 ### Added
 
--   Can now scale shapes (#152)
--   Can now plot columns from GeoDataFrame (#149)
+- Can now scale shapes (#152)
+- Can now plot columns from GeoDataFrame (#149)
 
 ### Fixed
 
--   Multipolygons are now handled correctly (#93)
--   Legend order is now deterministic (#143)
--   Images no longer normalised by default (#150)
--   Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
--   Colorbar no longer autoscales to [0, 1] (#155)
--   Plotting shapes after a spatial query is now possible (#163)
+- Multipolygons are now handled correctly (#93)
+- Legend order is now deterministic (#143)
+- Images no longer normalised by default (#150)
+- Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
+- Colorbar no longer autoscales to [0, 1] (#155)
+- Plotting shapes after a spatial query is now possible (#163)
 
 ## [0.0.4] - 2023-08-11
 
 ### Fixed
 
--   Multi-scale images/labels are now correctly substituted and the action is logged (#131).
--   Empty geometries among the shapes can be handeled (#133).
--   `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
+- Multi-scale images/labels are now correctly substituted and the action is logged (#131).
+- Empty geometries among the shapes can be handeled (#133).
+- `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
 
 ## [0.0.2] - 2023-06-25
 
 ### Fixed
 
--   Multiple bugfixes of which I didn't keep track of.
+- Multiple bugfixes of which I didn't keep track of.
 
 ## [0.0.1] - 2023-04-04
 
 ### Added
 
--   Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.
+- Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.
diff --git a/README.md b/README.md
index 5dc823a5..ba786da3 100644
--- a/README.md
+++ b/README.md
@@ -26,8 +26,8 @@ SpatialData’s plotting capabilities allow to quickly visualise all contained m
 
 For more information on the `spatialdata-plot` library, please refer to the [documentation](https://spatialdata.scverse.org/projects/plot/en/latest/index.html). In particular, the
 
--   [API documentation][link-api].
--   [Example notebooks][link-notebooks] (section "Visiualizations")
+- [API documentation][link-api].
+- [Example notebooks][link-notebooks] (section "Visiualizations")
 
 ## Installation
 
diff --git a/docs/contributing.md b/docs/contributing.md
index 66a84688..77e97aae 100644
--- a/docs/contributing.md
+++ b/docs/contributing.md
@@ -99,11 +99,11 @@ Specify `vX.X.X` as a tag name and create a release. For more information, see [
 
 Please write documentation for new or changed features and use-cases. This project uses [sphinx][] with the following features:
 
--   the [myst][] extension allows to write documentation in markdown/Markedly Structured Text
--   [Numpy-style docstrings][numpydoc] (through the [napoloen][numpydoc-napoleon] extension).
--   Jupyter notebooks as tutorials through [myst-nb][] (See [Tutorials with myst-nb](#tutorials-with-myst-nb-and-jupyter-notebooks))
--   [Sphinx autodoc typehints][], to automatically reference annotated input and output types
--   Citations (like {cite:p}`Virshup_2023`) can be included with [sphinxcontrib-bibtex](https://sphinxcontrib-bibtex.readthedocs.io/)
+- the [myst][] extension allows to write documentation in markdown/Markedly Structured Text
+- [Numpy-style docstrings][numpydoc] (through the [napoloen][numpydoc-napoleon] extension).
+- Jupyter notebooks as tutorials through [myst-nb][] (See [Tutorials with myst-nb](#tutorials-with-myst-nb-and-jupyter-notebooks))
+- [Sphinx autodoc typehints][], to automatically reference annotated input and output types
+- Citations (like {cite:p}`Virshup_2023`) can be included with [sphinxcontrib-bibtex](https://sphinxcontrib-bibtex.readthedocs.io/)
 
 See the [scanpy developer docs](https://scanpy.readthedocs.io/en/latest/dev/documentation.html) for more information
 on how to write documentation.
@@ -120,10 +120,10 @@ repository.
 
 #### Hints
 
--   If you refer to objects from other packages, please add an entry to `intersphinx_mapping` in `docs/conf.py`. Only
-    if you do so can sphinx automatically create a link to the external documentation.
--   If building the documentation fails because of a missing link that is outside your control, you can add an entry to
-    the `nitpick_ignore` list in `docs/conf.py`
+- If you refer to objects from other packages, please add an entry to `intersphinx_mapping` in `docs/conf.py`. Only
+  if you do so can sphinx automatically create a link to the external documentation.
+- If building the documentation fails because of a missing link that is outside your control, you can add an entry to
+  the `nitpick_ignore` list in `docs/conf.py`
 
 #### Building the docs locally
 

From e10b83b3f72d7f9ba39613da5b5ea7b0b7ff5484 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Thu, 26 Dec 2024 16:53:22 +0000
Subject: [PATCH 3/5] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 CHANGELOG.md | 124 +++++++++++++++++++++++++--------------------------
 1 file changed, 62 insertions(+), 62 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 5fe81d35..ef4f1bec 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -12,167 +12,167 @@ and this project adheres to [Semantic Versioning][].
 
 ### Fixed
 
--   Transformations of Points and Shapes are now applied before rendering with datashader (#378)
--   Fix bug due to `sc.get.obs_df()` returning a different type (#393)
+- Transformations of Points and Shapes are now applied before rendering with datashader (#378)
+- Fix bug due to `sc.get.obs_df()` returning a different type (#393)
 
 ## [0.2.8] - 2024-11-26
 
 ### Changed
 
--   Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
+- Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
 
 ## [0.2.7] - 2024-10-24
 
 ### Added
 
--   The user can now specify `datashader_reduction` to control the rendering behavior (#309)
--   Rendering outlines of shapes with datashader works now (#309)
+- The user can now specify `datashader_reduction` to control the rendering behavior (#309)
+- Rendering outlines of shapes with datashader works now (#309)
 
 ### Fixed
 
--   datashader now uses canvas size = image size which speeds up the rendering (#309)
--   datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
--   point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
--   Giving a custom colormap when rendering a multiscale image now works (#586)
+- datashader now uses canvas size = image size which speeds up the rendering (#309)
+- datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
+- point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
+- Giving a custom colormap when rendering a multiscale image now works (#586)
 
 ## [0.2.6] - 2024-09-04
 
 ### Changed
 
--   Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
--   When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
--   When rendering a single image channel, a colorbar is now shown (#346)
--   Removed `percentiles_for_norm` parameter (#346)
--   Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
+- Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
+- When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
+- When rendering a single image channel, a colorbar is now shown (#346)
+- Removed `percentiles_for_norm` parameter (#346)
+- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
 
 ### Fixed
 
--   Filtering with `groups` now preserves original cmap (#344)
--   Non-selected `groups` are now not shown in `na_color` (#344)
--   Several issues associated with `norm` and `colorbar` (#346)
+- Filtering with `groups` now preserves original cmap (#344)
+- Non-selected `groups` are now not shown in `na_color` (#344)
+- Several issues associated with `norm` and `colorbar` (#346)
 
 ## [0.2.5] - 2024-08-23
 
 ### Changed
 
--   Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
--   Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
--   Removed `preprocessing` (.pp) accessor (#329)
+- Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
+- Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
+- Removed `preprocessing` (.pp) accessor (#329)
 
 ### Fixed
 
--   Minor fixes for several tests as a result of the threshold change (#323)
+- Minor fixes for several tests as a result of the threshold change (#323)
 
 ## [0.2.4] - 2024-08-07
 
 ### Added
 
--   Added utils function for 0-transparent cmaps (#302)
+- Added utils function for 0-transparent cmaps (#302)
 
 ### Fixed
 
--   Took RNG out of categorical label test (#306)
--   Performance bug when plotting shapes (#298)
--   scale parameter was ignored for single-scale images (#301)
--   Changes to support for dask-expr (#283)
--   Added error handling for non-existent elements (#305)
--   Specifying vmin and vmax properly clips image data (#307)
--   import bug `get_cmap()` (8fd969c)
+- Took RNG out of categorical label test (#306)
+- Performance bug when plotting shapes (#298)
+- scale parameter was ignored for single-scale images (#301)
+- Changes to support for dask-expr (#283)
+- Added error handling for non-existent elements (#305)
+- Specifying vmin and vmax properly clips image data (#307)
+- import bug `get_cmap()` (8fd969c)
 
 ## [0.2.3] - 2024-07-03
 
 ### Added
 
--   Datashader support for points and shapes (#244)
+- Datashader support for points and shapes (#244)
 
 ### Changed
 
--   All parameters are now provided for a single element (#272)
+- All parameters are now provided for a single element (#272)
 
 ### Fixed
 
--   Fix color assignment for NaN values (#257)
--   Zorder of rendering now strictly follows the order of the render_x calls (#244)
+- Fix color assignment for NaN values (#257)
+- Zorder of rendering now strictly follows the order of the render_x calls (#244)
 
 ## [0.2.2] - 2024-05-02
 
 ### Fixed
 
--   Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
--   Fix channel str support (#221)
+- Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
+- Fix channel str support (#221)
 
 ## [0.2.1] - 2024-03-26
 
 ### Minor
 
--   Adjusted GitHub worklows
+- Adjusted GitHub worklows
 
 ## [0.2.0] - 2024-03-24
 
 ### Added
 
--   Support for plotting multiple tables @melonora
+- Support for plotting multiple tables @melonora
 
 ### Fixed
 
--   Several bugfixes, especially for colors and palettes @melonora
+- Several bugfixes, especially for colors and palettes @melonora
 
 ## [0.1.0] - 2024-01-17
 
 ### Added
 
--   Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
--   Large images are automatically rasterized to speed up performance (#164)
--   Added better error message for mismatch in cs and ax number (#185)
--   Beter test coverage for correct plotting of elements after transformation (#198)
--   Can now stack render commands (#190, #192)
--   The `color` argument in render_shapes/points now accepts actual colors as well (#199)
--   Input arguments are now evaulated for their types in basic.py (#199)
+- Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
+- Large images are automatically rasterized to speed up performance (#164)
+- Added better error message for mismatch in cs and ax number (#185)
+- Beter test coverage for correct plotting of elements after transformation (#198)
+- Can now stack render commands (#190, #192)
+- The `color` argument in render_shapes/points now accepts actual colors as well (#199)
+- Input arguments are now evaulated for their types in basic.py (#199)
 
 ### Fixed
 
--   Now dropping index when plotting shapes after spatial query (#177)
--   Points are now being correctly rotated (#198)
--   User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
+- Now dropping index when plotting shapes after spatial query (#177)
+- Points are now being correctly rotated (#198)
+- User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
 
 ## [0.0.6] - 2023-11-06
 
 ### Added
 
--   Pushed `get_extent` functionality upstream to `spatialdata` (#162)
+- Pushed `get_extent` functionality upstream to `spatialdata` (#162)
 
 ## [0.0.5] - 2023-10-02
 
 ### Added
 
--   Can now scale shapes (#152)
--   Can now plot columns from GeoDataFrame (#149)
+- Can now scale shapes (#152)
+- Can now plot columns from GeoDataFrame (#149)
 
 ### Fixed
 
--   Multipolygons are now handled correctly (#93)
--   Legend order is now deterministic (#143)
--   Images no longer normalised by default (#150)
--   Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
--   Colorbar no longer autoscales to [0, 1] (#155)
--   Plotting shapes after a spatial query is now possible (#163)
+- Multipolygons are now handled correctly (#93)
+- Legend order is now deterministic (#143)
+- Images no longer normalised by default (#150)
+- Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
+- Colorbar no longer autoscales to [0, 1] (#155)
+- Plotting shapes after a spatial query is now possible (#163)
 
 ## [0.0.4] - 2023-08-11
 
 ### Fixed
 
--   Multi-scale images/labels are now correctly substituted and the action is logged (#131).
--   Empty geometries among the shapes can be handeled (#133).
--   `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
+- Multi-scale images/labels are now correctly substituted and the action is logged (#131).
+- Empty geometries among the shapes can be handeled (#133).
+- `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
 
 ## [0.0.2] - 2023-06-25
 
 ### Fixed
 
--   Multiple bugfixes of which I didn't keep track of.
+- Multiple bugfixes of which I didn't keep track of.
 
 ## [0.0.1] - 2023-04-04
 
 ### Added
 
--   Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.
+- Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.

From 2ffb791a4ab463e253392321ab4f18e56fb83c11 Mon Sep 17 00:00:00 2001
From: Luca Marconato <m.lucalmer@gmail.com>
Date: Thu, 26 Dec 2024 18:22:37 +0100
Subject: [PATCH 4/5] fixed plotting datashader categorical column

---
 src/spatialdata_plot/pl/render.py               |   7 ++++++-
 ...ints_categorical_color_column_datashader.png | Bin 0 -> 21293 bytes
 2 files changed, 6 insertions(+), 1 deletion(-)
 create mode 100644 tests/_images/Points_points_categorical_color_column_datashader.png

diff --git a/src/spatialdata_plot/pl/render.py b/src/spatialdata_plot/pl/render.py
index 08b2094c..e85dfca1 100644
--- a/src/spatialdata_plot/pl/render.py
+++ b/src/spatialdata_plot/pl/render.py
@@ -525,7 +525,12 @@ def _render_points(
         # use datashader for the visualization of points
         cvs = ds.Canvas(plot_width=plot_width, plot_height=plot_height, x_range=x_ext, y_range=y_ext)
 
-        color_by_categorical = col_for_color is not None and points[col_for_color].values.dtype == object
+        color_by_categorical = col_for_color is not None and transformed_element[col_for_color].values.dtype in (
+            object,
+            "categorical",
+        )
+        if color_by_categorical and transformed_element[col_for_color].values.dtype == object:
+            transformed_element[col_for_color] = transformed_element[col_for_color].astype("category")
         aggregate_with_reduction = None
         if col_for_color is not None and (render_params.groups is None or len(render_params.groups) > 1):
             if color_by_categorical:
diff --git a/tests/_images/Points_points_categorical_color_column_datashader.png b/tests/_images/Points_points_categorical_color_column_datashader.png
new file mode 100644
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From 6ab64b81726d95673cac85119436ee823f8eeef1 Mon Sep 17 00:00:00 2001
From: Luca Marconato <m.lucalmer@gmail.com>
Date: Thu, 26 Dec 2024 18:53:58 +0100
Subject: [PATCH 5/5] updated changelog

---
 CHANGELOG.md | 126 ++++++++++++++++++++++++++-------------------------
 1 file changed, 64 insertions(+), 62 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index ef4f1bec..19393061 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -12,167 +12,169 @@ and this project adheres to [Semantic Versioning][].
 
 ### Fixed
 
-- Transformations of Points and Shapes are now applied before rendering with datashader (#378)
-- Fix bug due to `sc.get.obs_df()` returning a different type (#393)
+-   Transformations of Points and Shapes are now applied before rendering with datashader (#378)
+-   Fix bug due to `sc.get.obs_df()` returning a different type (#393)
+-   Allowing instance mismatch between shapes and tables (#396)
+-   Fix bug when plotting categorical points with datashader (#395)
 
 ## [0.2.8] - 2024-11-26
 
 ### Changed
 
-- Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
+-   Support for `xarray.DataTree` (which moved from `datatree.DataTree`) (#380)
 
 ## [0.2.7] - 2024-10-24
 
 ### Added
 
-- The user can now specify `datashader_reduction` to control the rendering behavior (#309)
-- Rendering outlines of shapes with datashader works now (#309)
+-   The user can now specify `datashader_reduction` to control the rendering behavior (#309)
+-   Rendering outlines of shapes with datashader works now (#309)
 
 ### Fixed
 
-- datashader now uses canvas size = image size which speeds up the rendering (#309)
-- datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
-- point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
-- Giving a custom colormap when rendering a multiscale image now works (#586)
+-   datashader now uses canvas size = image size which speeds up the rendering (#309)
+-   datashader now uses the `linear` as interpolation method for colormaps instead of the default `eq_hist` to make it equivalent to matplotlib (#309)
+-   point sizes of datashader now agree with matplotlib also when dpi != 100 (#309)
+-   Giving a custom colormap when rendering a multiscale image now works (#586)
 
 ## [0.2.6] - 2024-09-04
 
 ### Changed
 
-- Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
-- When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
-- When rendering a single image channel, a colorbar is now shown (#346)
-- Removed `percentiles_for_norm` parameter (#346)
-- Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
+-   Lowered RMSE-threshold for plot-based tests from 45 to 15 (#344)
+-   When subsetting to `groups`, `NA` isn't automatically added to legend (#344)
+-   When rendering a single image channel, a colorbar is now shown (#346)
+-   Removed `percentiles_for_norm` parameter (#346)
+-   Changed `norm` to no longer accept bools, only `mpl.colors.Normalise` or `None` (#346)
 
 ### Fixed
 
-- Filtering with `groups` now preserves original cmap (#344)
-- Non-selected `groups` are now not shown in `na_color` (#344)
-- Several issues associated with `norm` and `colorbar` (#346)
+-   Filtering with `groups` now preserves original cmap (#344)
+-   Non-selected `groups` are now not shown in `na_color` (#344)
+-   Several issues associated with `norm` and `colorbar` (#346)
 
 ## [0.2.5] - 2024-08-23
 
 ### Changed
 
-- Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
-- Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
-- Removed `preprocessing` (.pp) accessor (#329)
+-   Replaced `outline` parameter in `render_labels` with alpha-based logic (#323)
+-   Lowered RMSE-threshold for plot-based tests from 60 to 45 (#323)
+-   Removed `preprocessing` (.pp) accessor (#329)
 
 ### Fixed
 
-- Minor fixes for several tests as a result of the threshold change (#323)
+-   Minor fixes for several tests as a result of the threshold change (#323)
 
 ## [0.2.4] - 2024-08-07
 
 ### Added
 
-- Added utils function for 0-transparent cmaps (#302)
+-   Added utils function for 0-transparent cmaps (#302)
 
 ### Fixed
 
-- Took RNG out of categorical label test (#306)
-- Performance bug when plotting shapes (#298)
-- scale parameter was ignored for single-scale images (#301)
-- Changes to support for dask-expr (#283)
-- Added error handling for non-existent elements (#305)
-- Specifying vmin and vmax properly clips image data (#307)
-- import bug `get_cmap()` (8fd969c)
+-   Took RNG out of categorical label test (#306)
+-   Performance bug when plotting shapes (#298)
+-   scale parameter was ignored for single-scale images (#301)
+-   Changes to support for dask-expr (#283)
+-   Added error handling for non-existent elements (#305)
+-   Specifying vmin and vmax properly clips image data (#307)
+-   import bug `get_cmap()` (8fd969c)
 
 ## [0.2.3] - 2024-07-03
 
 ### Added
 
-- Datashader support for points and shapes (#244)
+-   Datashader support for points and shapes (#244)
 
 ### Changed
 
-- All parameters are now provided for a single element (#272)
+-   All parameters are now provided for a single element (#272)
 
 ### Fixed
 
-- Fix color assignment for NaN values (#257)
-- Zorder of rendering now strictly follows the order of the render_x calls (#244)
+-   Fix color assignment for NaN values (#257)
+-   Zorder of rendering now strictly follows the order of the render_x calls (#244)
 
 ## [0.2.2] - 2024-05-02
 
 ### Fixed
 
-- Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
-- Fix channel str support (#221)
+-   Fixed `fill_alpha` ignoring `alpha` channel from custom cmap (#236)
+-   Fix channel str support (#221)
 
 ## [0.2.1] - 2024-03-26
 
 ### Minor
 
-- Adjusted GitHub worklows
+-   Adjusted GitHub worklows
 
 ## [0.2.0] - 2024-03-24
 
 ### Added
 
-- Support for plotting multiple tables @melonora
+-   Support for plotting multiple tables @melonora
 
 ### Fixed
 
-- Several bugfixes, especially for colors and palettes @melonora
+-   Several bugfixes, especially for colors and palettes @melonora
 
 ## [0.1.0] - 2024-01-17
 
 ### Added
 
-- Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
-- Large images are automatically rasterized to speed up performance (#164)
-- Added better error message for mismatch in cs and ax number (#185)
-- Beter test coverage for correct plotting of elements after transformation (#198)
-- Can now stack render commands (#190, #192)
-- The `color` argument in render_shapes/points now accepts actual colors as well (#199)
-- Input arguments are now evaulated for their types in basic.py (#199)
+-   Multiscale image handling: user can specify a scale, else the best scale is selected automatically given the figure size and dpi (#164)
+-   Large images are automatically rasterized to speed up performance (#164)
+-   Added better error message for mismatch in cs and ax number (#185)
+-   Beter test coverage for correct plotting of elements after transformation (#198)
+-   Can now stack render commands (#190, #192)
+-   The `color` argument in render_shapes/points now accepts actual colors as well (#199)
+-   Input arguments are now evaulated for their types in basic.py (#199)
 
 ### Fixed
 
-- Now dropping index when plotting shapes after spatial query (#177)
-- Points are now being correctly rotated (#198)
-- User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
+-   Now dropping index when plotting shapes after spatial query (#177)
+-   Points are now being correctly rotated (#198)
+-   User can now pass Colormap objects to the cmap argument in render_images. When only one cmap is given for 3 channels, it is now applied to each channel (#188, #194)
 
 ## [0.0.6] - 2023-11-06
 
 ### Added
 
-- Pushed `get_extent` functionality upstream to `spatialdata` (#162)
+-   Pushed `get_extent` functionality upstream to `spatialdata` (#162)
 
 ## [0.0.5] - 2023-10-02
 
 ### Added
 
-- Can now scale shapes (#152)
-- Can now plot columns from GeoDataFrame (#149)
+-   Can now scale shapes (#152)
+-   Can now plot columns from GeoDataFrame (#149)
 
 ### Fixed
 
-- Multipolygons are now handled correctly (#93)
-- Legend order is now deterministic (#143)
-- Images no longer normalised by default (#150)
-- Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
-- Colorbar no longer autoscales to [0, 1] (#155)
-- Plotting shapes after a spatial query is now possible (#163)
+-   Multipolygons are now handled correctly (#93)
+-   Legend order is now deterministic (#143)
+-   Images no longer normalised by default (#150)
+-   Filtering of shapes and points using the `groups` argument is now possible, coloring by palette and cmap arguments works for shapes and points (#153)
+-   Colorbar no longer autoscales to [0, 1] (#155)
+-   Plotting shapes after a spatial query is now possible (#163)
 
 ## [0.0.4] - 2023-08-11
 
 ### Fixed
 
-- Multi-scale images/labels are now correctly substituted and the action is logged (#131).
-- Empty geometries among the shapes can be handeled (#133).
-- `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
+-   Multi-scale images/labels are now correctly substituted and the action is logged (#131).
+-   Empty geometries among the shapes can be handeled (#133).
+-   `outline_width` parameter in render_shapes is now a float that actually determines the line width (#139).
 
 ## [0.0.2] - 2023-06-25
 
 ### Fixed
 
-- Multiple bugfixes of which I didn't keep track of.
+-   Multiple bugfixes of which I didn't keep track of.
 
 ## [0.0.1] - 2023-04-04
 
 ### Added
 
-- Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.
+-   Initial release of `spatialdata-plot` with support for `images`, `labels`, `points` and `shapes`.