@@ -109,21 +109,24 @@ fastr: {
109109 F2C_BINARY : { name : "f2c-binary" , version : "7" , platformspecific : true },
110110 FASTR_RECOMMENDED_BINARY : { name : "fastr-recommended-pkgs" , version : "12" , platformspecific : true },
111111 }
112+ catch_files : ${common.catch_files} [
113+ "GNUR_CONFIG_LOG = (?P<filename>.+\\ .log)" ,
114+ "GNUR_MAKE_LOG = (?P<filename>.+\\ .log)" ,
115+ ]
112116}
113117
114118fastr_linux : ${fastr} {
115119 packages : {
116120 readline : "==6.3" ,
117- pcre : "==8.43 " ,
121+ pcre2 : "==10.37 " ,
118122 zlib : ">=1.2.11" ,
119123 curl : ">=7.50.1" ,
120124 gnur : "==4.0.3-gcc4.8.5-pcre8.42"
121125 }
122126 environment : {
123127 TZDIR : "/usr/share/zoneinfo"
124- PKG_INCLUDE_FLAGS_OVERRIDE : "-I/cm/shared/apps/zlib/1.2.11/include -I/cm/shared/apps/bzip2/1.0.6/include -I/cm/shared/apps/xz/5.2.2/include -I/cm/shared/apps/pcre/8.43/include -I/cm/shared/apps/curl/7.50.1/include"
125- PKG_LDFLAGS_OVERRIDE : "-L/cm/shared/apps/zlib/1.2.11/lib -L/cm/shared/apps/bzip2/1.0.6/lib -L/cm/shared/apps/xz/5.2.2/lib -L/cm/shared/apps/pcre/8.43/lib -L/cm/shared/apps/curl/7.50.1/lib -L/cm/shared/apps/gcc/4.8.5/lib64"
126- GNUR_HOME_BINARY : "/cm/shared/apps/gnur/4.0.3-gcc4.8.5-pcre8.42/lib64/R" ,
128+ PKG_INCLUDE_FLAGS_OVERRIDE : "-I/cm/shared/apps/zlib/1.2.11/include -I/cm/shared/apps/bzip2/1.0.6/include -I/cm/shared/apps/xz/5.2.2/include -I/cm/shared/apps/pcre2/10.37/include -I/cm/shared/apps/curl/7.50.1/include"
129+ PKG_LDFLAGS_OVERRIDE : "-L/cm/shared/apps/zlib/1.2.11/lib -L/cm/shared/apps/bzip2/1.0.6/lib -L/cm/shared/apps/xz/5.2.2/lib -L/cm/shared/apps/pcre2/10.37/lib -L/cm/shared/apps/curl/7.50.1/lib -L/cm/shared/apps/gcc/4.8.5/lib64"
127130 FASTR_FC : "/cm/shared/apps/gcc/4.8.5/bin/gfortran"
128131 }
129132 downloads : {
@@ -133,17 +136,16 @@ fastr_linux: ${fastr} {
133136
134137fastr_darwin : ${fastr} {
135138 packages : {
136- "pcre" : "==8.43" ,
137- "gnur" : "==4.0.3-gcc10.2-pcre8.42"
139+ "pcre2" : "==10.37" ,
138140 }
139141 environment : {
140142 PATH : "/usr/local/bin:$JAVA_HOME/bin:$PATH"
141143 FASTR_FC : "/cm/shared/apps/gcc/8.3.0/bin/gfortran"
144+ GNUR_FC : "/cm/shared/apps/gcc/8.3.0/bin/gfortran"
142145 TZDIR : "/usr/share/zoneinfo"
143146 FASTR_LIBZ_VER : "1.2.11"
144- GNUR_HOME_BINARY : "/cm/shared/apps/gnur/4.0.3-gcc10.2-pcre8.42/lib/R/"
145- PKG_INCLUDE_FLAGS_OVERRIDE : "-I/cm/shared/apps/pcre/8.43/include -I/cm/shared/apps/bzip2/1.0.6/include -I/cm/shared/apps/xz/5.2.2/include -I/cm/shared/apps/curl/7.50.1/include"
146- PKG_LDFLAGS_OVERRIDE : "-L/cm/shared/apps/bzip2/1.0.6/lib -L/cm/shared/apps/xz/5.2.2/lib -L/cm/shared/apps/pcre/8.43/lib -L/cm/shared/apps/curl/7.50.1/lib -L/cm/shared/apps/gcc/10.2.0/lib -L/usr/lib"
147+ PKG_INCLUDE_FLAGS_OVERRIDE : "-I/cm/shared/apps/pcre2/pcre2-10.37/include -I/cm/shared/apps/bzip2/1.0.6/include -I/cm/shared/apps/xz/5.2.2/include -I/cm/shared/apps/curl/7.50.1/include"
148+ PKG_LDFLAGS_OVERRIDE : "-L/cm/shared/apps/bzip2/1.0.6/lib -L/cm/shared/apps/xz/5.2.2/lib -L/cm/shared/apps/pcre2/pcre2-10.37/lib -L/cm/shared/apps/curl/7.50.1/lib -L/cm/shared/apps/gcc/10.2.0/lib -L/usr/lib"
147149 }
148150 downloads : {
149151 BLAS_LAPACK_DIR : { name : "fastr-403-blas-lapack-gcc" , version : "8.3.0" , platformspecific : true },
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