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1 parent 951bacd commit 4a71c12Copy full SHA for 4a71c12
nipype/workflows/dmri/fsl/tbss.py
@@ -264,8 +264,11 @@ def create_tbss_3_postreg(name='tbss_3_postreg', estimate_skeleton=True):
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# $FSLDIR/bin/fslmaths $FSLDIR/data/standard/FMRIB58_FA_1mm -mas mean_FA_mask mean_FA
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maskstd = pe.Node(
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fsl.ImageMaths(op_string="-mas", suffix="_masked"), name="maskstd")
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- maskstd.inputs.in_file = fsl.Info.standard_image(
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- "FMRIB58_FA_1mm.nii.gz")
+ if fsl.no_fsl():
+ warn('NO FSL found')
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+ else:
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+ maskstd.inputs.in_file = fsl.Info.standard_image(
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+ "FMRIB58_FA_1mm.nii.gz")
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# $FSLDIR/bin/fslmaths mean_FA -bin mean_FA_mask
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binmaskstd = pe.Node(
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